Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P04
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61956-3|ABA03115.1|  402|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U61956-2|ABA03113.1|  440|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U61956-1|ABA03114.1|  408|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>U61956-3|ABA03115.1|  402|Caenorhabditis elegans Hypothetical
           protein R13H7.2c protein.
          Length = 402

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +1

Query: 208 FCY-FIADFLTKCIFLI*NMRLHSNMNIXXXXXTSVLYGLNMVSN---YYLPLNFVDFNC 375
           FC+  I + L  C+ L  NMR  +N+ +       ++  + M+ N    + P+   D+  
Sbjct: 50  FCFGVIGNVLNLCVLLSRNMRNEANILLSAMAICDIILLVTMLPNSLGVWYPMYMSDWFR 109

Query: 376 CFIFNIHLYRLVL 414
            FIFN + + + L
Sbjct: 110 KFIFNSNTWTIFL 122


>U61956-2|ABA03113.1|  440|Caenorhabditis elegans Hypothetical
           protein R13H7.2a protein.
          Length = 440

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +1

Query: 208 FCY-FIADFLTKCIFLI*NMRLHSNMNIXXXXXTSVLYGLNMVSN---YYLPLNFVDFNC 375
           FC+  I + L  C+ L  NMR  +N+ +       ++  + M+ N    + P+   D+  
Sbjct: 88  FCFGVIGNVLNLCVLLSRNMRNEANILLSAMAICDIILLVTMLPNSLGVWYPMYMSDWFR 147

Query: 376 CFIFNIHLYRLVL 414
            FIFN + + + L
Sbjct: 148 KFIFNSNTWTIFL 160


>U61956-1|ABA03114.1|  408|Caenorhabditis elegans Hypothetical
           protein R13H7.2b protein.
          Length = 408

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +1

Query: 208 FCY-FIADFLTKCIFLI*NMRLHSNMNIXXXXXTSVLYGLNMVSN---YYLPLNFVDFNC 375
           FC+  I + L  C+ L  NMR  +N+ +       ++  + M+ N    + P+   D+  
Sbjct: 56  FCFGVIGNVLNLCVLLSRNMRNEANILLSAMAICDIILLVTMLPNSLGVWYPMYMSDWFR 115

Query: 376 CFIFNIHLYRLVL 414
            FIFN + + + L
Sbjct: 116 KFIFNSNTWTIFL 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,557,063
Number of Sequences: 27780
Number of extensions: 287950
Number of successful extensions: 589
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)