Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P03
         (896 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   4.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   4.3  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   5.7  
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    22   5.7  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    22   5.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   9.9  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   9.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   9.9  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 469 TPAKLESKVDFPTEGKPTKPIRASP 395
           T   L   +DFP +GK   P ++SP
Sbjct: 205 TQLPLNLGLDFPYQGKFEVPTKSSP 229


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 480  VAAYEFTTLTTVPGCI 527
            VA YEF TLT   G I
Sbjct: 1574 VAEYEFATLTVTGGTI 1589


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 451 SLTWPEYTLKW 483
           SL W +Y LKW
Sbjct: 57  SLEWNDYNLKW 67


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 451 SLTWPEYTLKW 483
           SL W +Y LKW
Sbjct: 57  SLEWNDYNLKW 67


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 460 KLESKVDFPTEGKPTKPIR 404
           K+ SK+D     KP KP++
Sbjct: 101 KILSKIDETLNSKPLKPVK 119


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 460 KLESKVDFPTEGKPTKPIR 404
           K+ SK+D     KP KP++
Sbjct: 97  KILSKIDETLNSKPLKPVK 115


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 729 KQPPNIHFRKKDXXWN 776
           K PPN   R K   WN
Sbjct: 406 KLPPNYEIRHKFKLWN 421


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 670 HCNTRNSSNMNWKASGY 720
           HC  + SS++ W  +G+
Sbjct: 76  HCRFKFSSSVGWSPAGH 92


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -2

Query: 544 LAPLYLMQPGTVVSVVNSYAATSEYTPAKLESKVDFPTEGKPTKPIRASPVFAT 383
           LAP +L  P T      S       +   + S  D  T G P    R++P  +T
Sbjct: 81  LAPTHLQSPNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPP---RSTPPLST 131


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,807
Number of Sequences: 336
Number of extensions: 4018
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24927353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)