Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_P03
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 229 5e-61
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 186 5e-48
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 66 6e-12
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 42 2e-04
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 39 0.001
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 30 0.39
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 30 0.39
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 30 0.51
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 29 0.90
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 2.7
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 27 3.6
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 27 3.6
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 4.8
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 26 6.3
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 6.3
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 26 6.3
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 26 8.4
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo... 26 8.4
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 26 8.4
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 229 bits (559), Expect = 5e-61
Identities = 117/228 (51%), Positives = 146/228 (64%)
Frame = +3
Query: 213 MSTILEKIAAIESEMARTQKNKATALHLGIXXXXXXXXXXELITPKXXXXXXXXXFDVAK 392
M+T +KI +E EMA+TQKNKATA HLG+ ELITP FDVA+
Sbjct: 1 MATTAQKIKEVEDEMAKTQKNKATAKHLGMLKAKLAKLKRELITPTGGGGGGGLGFDVAR 60
Query: 393 TGDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLHLPGI 572
TG +GF+GFPSVGKSTL++ L G SE AAYEFTTLTTVPG ++Y GAKIQ+L LPGI
Sbjct: 61 TGIGTVGFIGFPSVGKSTLMTQLTGTRSEAAAYEFTTLTTVPGVLQYNGAKIQILDLPGI 120
Query: 573 IEGAKDGKGRGRQVIAVARTCSLIFIVLDVXXXXXXXXXXXXXXXXXXXXXNKQPPNIHF 752
IEGAKDG+GRG+QVI VARTC+LIFIVLDV NK+PPNI F
Sbjct: 121 IEGAKDGRGRGKQVITVARTCNLIFIVLDVLKPMSHKRIIEEELEGFGIRLNKEPPNIVF 180
Query: 753 RKKDXXWNXX*IQHVLXSELDVXAVKTILSEYKIHNADIXLRYDAXSD 896
+KK+ V + +D+ ++ + SEY++++ADI R DA D
Sbjct: 181 KKKERG-GINITNTVPLTHIDLDEIRAVCSEYRVNSADIAFRCDATID 227
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 186 bits (452), Expect = 5e-48
Identities = 102/226 (45%), Positives = 128/226 (56%), Gaps = 1/226 (0%)
Frame = +3
Query: 222 ILEKIAAIESEMARTQKNKATALHLGIXXXXXXXXXXELITPKXXXXXXXXXFDVAKTGD 401
+LEKI IE+EM RTQKNKAT HLG+ +L+ P FDV K+GD
Sbjct: 3 VLEKIQEIEAEMRRTQKNKATEYHLGLLKGKLAKLRAQLLEPTSKSGPKGEGFDVLKSGD 62
Query: 402 ARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLHLPGIIEG 581
AR+ F+GFPSVGKSTLLS + S A+YEFTTLT +PG ++Y GA+IQ+L LPGIIEG
Sbjct: 63 ARVAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPGIIEG 122
Query: 582 AKDGKGRGRQVIAVARTCSLIFIVLDVXXXXXXXXXXXXXXXXXXXXXNKQPPNIHFR-K 758
A G+G GRQ ++ ART LI +VLD N+QPPN+ K
Sbjct: 123 ASQGRG-GRQAVSAARTADLILMVLDATKAADQREKIEYELEQVGIRLNRQPPNVTLTIK 181
Query: 759 KDXXWNXX*IQHVLXSELDVXAVKTILSEYKIHNADIXLRYDAXSD 896
K+ V + +D IL EY+IHNADI +R D D
Sbjct: 182 KNGGIKFN--HTVPLTHMDYKMAYNILHEYRIHNADILIREDITVD 225
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 66.1 bits (154), Expect = 6e-12
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Frame = +3
Query: 408 IGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIK------YKGAKIQLLHLPG 569
IG VG P+ GKSTLL+ L S+V YEFTT+ G IK + + +L +PG
Sbjct: 239 IGLVGLPNAGKSTLLNCLTASKSKVGEYEFTTIYPKIGTIKTTMPDDHSSFQYRLADIPG 298
Query: 570 IIEGAKDGKGRGRQVIAVARTCSLIFIVLDV 662
II+GA DGKG G + ++ +V+D+
Sbjct: 299 IIKGASDGKGLGYDFLRHVERAKMLCLVIDI 329
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 41.5 bits (93), Expect = 2e-04
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +3
Query: 420 GFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLHLPGIIE 578
G+P+VGKS+ ++ + +V Y FTT + G YK + Q++ PGI++
Sbjct: 175 GYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGHFDYKYLRWQVIDTPGILD 227
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 38.7 bits (86), Expect = 0.001
Identities = 37/114 (32%), Positives = 50/114 (43%), Gaps = 26/114 (22%)
Frame = +3
Query: 399 DARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTL---------TTVPGCIK------- 530
D IGFVG PS GKST+L+ L ++ + FTT+ C +
Sbjct: 4 DILIGFVGKPSSGKSTMLNALTDATAKTGNFPFTTIEPNRAIGYAQIECACSRFGLQDKC 63
Query: 531 ---YKGAK-------IQLLHLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVLDV 662
Y G K IQLL + G+I GA GKG G + + R + V+DV
Sbjct: 64 KPIYGGCKNGVRSIPIQLLDVAGLIPGAHAGKGLGNKFLDDLRHADALVHVVDV 117
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 30.3 bits (65), Expect = 0.39
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +3
Query: 408 IGFVGFPSVGKSTLLSNLA-----GVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLHLPGI 572
+G +G+P+VGKS++++ L G + A +TT +K K++L+ PGI
Sbjct: 272 VGVIGYPNVGKSSVINALVNRSANGRSAPCPAGNVAGMTTSLREVKLDN-KLRLVDSPGI 330
Query: 573 IEGAKDGK 596
+ + D K
Sbjct: 331 VFPSSDSK 338
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 30.3 bits (65), Expect = 0.39
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 405 RIGFVGFPSVGKSTLLSNLAGV-YSEVAAYEFTTLTTV 515
+IG VG P++GKSTL L A Y F T+ V
Sbjct: 47 KIGIVGMPNIGKSTLFQILTKTNLGNPANYPFATIDPV 84
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 29.9 bits (64), Expect = 0.51
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Frame = +3
Query: 405 RIGFVGFPSVGKSTLLSNLA-GVYSEVAAYEFTTL------TTVPG------CIKYK--- 536
+ G VG P+VGKST + V A Y + T+ VP C YK
Sbjct: 22 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81
Query: 537 --GAKIQLLHLPGIIEGAKDGKGRGRQVIAVARTCSLIFIVL 656
A + + + G+ +GA G G G ++ R I+ V+
Sbjct: 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVV 123
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 29.1 bits (62), Expect = 0.90
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +3
Query: 411 GFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLHLPGII 575
G VG+P+VGKS+ ++ L G S+ + T T K+ LL PG++
Sbjct: 305 GLVGYPNVGKSSTINALVG--SKKVSVSSTPGKTKHFQTINLSEKVSLLDCPGLV 357
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +3
Query: 408 IGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLHLPGIIEGAK 587
+ +G P GKSTL+ +L YS+ + T TV + K +I L P +
Sbjct: 77 VAVMGPPGTGKSTLIKSLVRRYSKYTISQITGPITV---VAGKKRRITFLECPNDLSSMI 133
Query: 588 D 590
D
Sbjct: 134 D 134
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 396 GDARIGFVGFPSVGKSTLLSNLAGV 470
G + FVG P+ GKS++L++L V
Sbjct: 144 GRVYVYFVGMPNTGKSSILNSLRNV 168
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 3.6
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +3
Query: 408 IGFVGFPSVGKSTLLSNL 461
+G +GFP+ GKS++++ L
Sbjct: 313 VGLIGFPNAGKSSIINTL 330
>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 103 FIYNFHIISCIHYLFIYL 156
F+Y+ H C++YLFIYL
Sbjct: 83 FLYSLH--RCVYYLFIYL 98
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 399 DARIGFVGFPSVGKSTLLSNLAGV 470
D+R+ VG GKSTLL+ + G+
Sbjct: 416 DSRVAIVGKNGTGKSTLLNLITGL 439
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 722 P*PEAFQFMFEEFLVLQWLQYIKYYKYKTACSSYSYYLPTSTF 594
P + F+F F+ L W ++I Y KT C+ ++ + T+
Sbjct: 869 PGADLFRFSFD--YGLHWSEWIDYLSNKTECTEFANNISLKTW 909
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 215 VYNIGKNCRYRVGDGAHTKKQSYCASF 295
++NI NC+Y + DG H+ S C F
Sbjct: 131 IWNIIGNCKYTITDGGHSDWVS-CVRF 156
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.8 bits (54), Expect = 8.4
Identities = 23/66 (34%), Positives = 30/66 (45%)
Frame = +3
Query: 408 IGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGCIKYKGAKIQLLHLPGIIEGAK 587
+ +G S GKSTLL+NL G V TT G K +L + +EG
Sbjct: 42 VAVLGSQSTGKSTLLNNLFGTSFSVMDASKRQQTT-KGIWLSKANNSPILVMD--VEGT- 97
Query: 588 DGKGRG 605
DG+ RG
Sbjct: 98 DGRERG 103
>SPAC30.02c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 281
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 686 FLVLQWLQYIKYYKYKTACSSYSYY 612
F++ L YIK ++Y+ C S S Y
Sbjct: 82 FVICDALNYIKGFRYQLYCESKSMY 106
>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 8.4
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = -2
Query: 568 PGRCSSCILAPLYLMQPGTVVSVVNSYAATSEYTPAKLESKVDFPTEGKPTKPI 407
P +CSSC Y GT V N+ +A S Y P L + T KPI
Sbjct: 562 PSQCSSCF--EQYCWN-GTTV---NNPSAVSNYAPTVLSASTTSGTSSVRAKPI 609
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,353
Number of Sequences: 5004
Number of extensions: 65627
Number of successful extensions: 227
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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