Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P02
         (914 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    38   0.47 
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    37   0.62 

>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 37.5 bits (83), Expect = 0.47
 Identities = 17/21 (80%), Positives = 17/21 (80%)
 Frame = +2

Query: 647 MNRPPPGERRXAYXALFRFLA 709
           MNRP  GERR AY ALFRFLA
Sbjct: 28  MNRPTRGERRFAYWALFRFLA 48


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 37.1 bits (82), Expect = 0.62
 Identities = 19/36 (52%), Positives = 20/36 (55%)
 Frame = +1

Query: 637 SCINESATARGEAVXXXGAXPXPRSXTXCXRXXGWG 744
           SCI + ATAR EAV    A P  RS T C R  G G
Sbjct: 265 SCIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCG 300


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 440,517,766
Number of Sequences: 1657284
Number of extensions: 4764520
Number of successful extensions: 4905
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4891
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83621356644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)