Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_P01
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024811-6|AAP68913.1|   90|Caenorhabditis elegans Hypothetical ...    27   0.47 

>AC024811-6|AAP68913.1|   90|Caenorhabditis elegans Hypothetical
           protein Y54E10BL.1 protein.
          Length = 90

 Score = 26.6 bits (56), Expect(2) = 0.47
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 418 GRWSQLPPRRTQARFPTSCNNCKSAGS-SP*SGKFTSRSSSPGS 290
           GR     PRR  +R P  C +C  A S +  + +    S  PGS
Sbjct: 42  GRAWSTSPRRRASRIPGLCEHCPPASSGTARNHRKVGESGDPGS 85



 Score = 24.6 bits (51), Expect(2) = 0.47
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 583 PVERRSSRLAGVGRRFRGAPVVVSYPHFWKS 491
           P+ERR+SR    GR FR   ++ +    W +
Sbjct: 17  PLERRTSRCWEEGRSFRITRIIRTIGRAWST 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,748,488
Number of Sequences: 27780
Number of extensions: 245494
Number of successful extensions: 788
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)