Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_O21
(981 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.061
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.11
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.76
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 28 1.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 4.0
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.061
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = +3
Query: 810 PXXPXXGXPPPXXKXTXXPXPXPXPPGXGP-PXPGXGAXXXKXPGGXPXPP 959
P P PP K + P P P G P P P A P G P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Score = 29.9 bits (64), Expect = 0.57
Identities = 15/50 (30%), Positives = 16/50 (32%)
Frame = +3
Query: 810 PXXPXXGXPPPXXKXTXXPXPXPXPPGXGPPXPGXGAXXXKXPGGXPXPP 959
P P PP K + P P P PP P A P PP
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Score = 29.5 bits (63), Expect = 0.76
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +3
Query: 810 PXXPXXGXPPPXXKXTXXPXPXPXPPGXGPPXPGXGAXXXKXPGGXPXPPP 962
P P PP K + P P PP PP P A P PP
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVP-PPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Frame = +3
Query: 810 PXXPXXGXPPPXXKXTXXPXPXPXPPGXGPPXPG-XGAXXXKXPGGXPXPPPXRGG 974
P P PP K + P P P PP P GA P P P G
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.11
Identities = 17/55 (30%), Positives = 17/55 (30%)
Frame = +3
Query: 810 PXXPXXGXPPPXXKXTXXPXPXPXPPGXGPPXPGXGAXXXKXPGGXPXPPPXRGG 974
P P P P P P P G PP P G P P PP G
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 32.3 bits (70), Expect = 0.11
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +3
Query: 801 PXXPXXPXXGXPPPXXKXTXXPXPXPXPPGXGPPXPGXGAXXXKXPGGXPXPPP 962
P P P G PPP P PP PP G P P P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 31.5 bits (68), Expect = 0.19
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Frame = +3
Query: 834 PPPXXKXTXXPXPXPXPPGXGPPXPGXGAXXXKXP-----GGXPXPPP 962
PPP P P P P PP P G P G P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +3
Query: 801 PXXPXXPXXGXPPPXXKXTXXPXPXPXPPGXGPPXPGXGAXXXKXPGGXPXPPP 962
P P P P P P P PP PG P P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP---PPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.76
Identities = 27/118 (22%), Positives = 29/118 (24%), Gaps = 8/118 (6%)
Frame = +3
Query: 633 PPPPXXXTXPKXGXSPPXPXGXQN----PRTXHXXGXAXXXXXXXXXXXXXXXXXXXXTX 800
PPPP + P G PP + P T
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420
Query: 801 PXXPXXPXXGXPP--PXXKXTXXPXPXPXPPGX--GPPXPGXGAXXXKXPGGXPXPPP 962
P P PP P P P PP PP P P P PPP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Score = 29.1 bits (62), Expect = 1.0
Identities = 30/127 (23%), Positives = 33/127 (25%), Gaps = 3/127 (2%)
Frame = +3
Query: 597 PQWAGPXXPXXXPPPPXXXTXPKXGXSPPXPXG--XQNPRTXHXXGXAXXXXXXXXXXXX 770
P + P P PPP T SPP P NP
Sbjct: 246 PSLSAPAPPPI--PPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAA 303
Query: 771 XXXXXXXXTXPXXPXXPXXGXPPPXXKXTXXPXPXPXPPGXGPPXPGXGAXXXKXPG-GX 947
P P G PP + P P PP P G+ G
Sbjct: 304 LAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP---PRSNAAGSIPLPPQGRSA 360
Query: 948 PXPPPXR 968
P PPP R
Sbjct: 361 PPPPPPR 367
Score = 27.1 bits (57), Expect = 4.0
Identities = 30/134 (22%), Positives = 33/134 (24%), Gaps = 7/134 (5%)
Frame = +2
Query: 581 NXXXPPX-MGRAXXXHXPPPPPXXGNXPQKXGXPPXXXXXAKPPXXAPXRXXXXXXXPLK 757
N PP G + PPPPP N PP PP PL
Sbjct: 321 NRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLS 380
Query: 758 RXXXXXXXXKXKNXXXXXXXSXGRXSPPL------RKKXXPXXPXPPPAXXGXPXPREXG 919
N GR +P L + P P PP P
Sbjct: 381 ------SSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPS 434
Query: 920 GXXQTPGGXXXPPP 961
P G PP
Sbjct: 435 APPSLPMGAPAAPP 448
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/47 (27%), Positives = 16/47 (34%)
Frame = +3
Query: 834 PPPXXKXTXXPXPXPXPPGXGPPXPGXGAXXXKXPGGXPXPPPXRGG 974
PPP + P P P A + G P P P +GG
Sbjct: 62 PPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQGG 108
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 597 PQWAGPXXPXXXPPPPXXXTXPKXGXSPPXPXG 695
PQ A P PPP + P +PP P G
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAG 1726
Score = 27.1 bits (57), Expect = 4.0
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +3
Query: 801 PXXPXXPXXGXPPPXXKXTXXPXPXPXPPGXGPPXPGXGAXXXKXPG 941
P P P PPP + P P P PP P A PG
Sbjct: 1705 PTPPPPPMSVPPPP----SAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Frame = +3
Query: 594 PPQWAGPXXPXX---XPPPPXXXTXPKXGXSPPXP 689
PPQ + P P PPPP P S P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +2
Query: 575 PGNXXXPPXMGRAXXXHXPPPPPXXGNXPQKXGXPP 682
PGN PP PPPPP G ++ P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 575 PGNXXXPPXMGRAXXXHXPPPP 640
PG PP M H PPPP
Sbjct: 203 PGEHMPPPPMHHKPGEHMPPPP 224
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 575 PGNXXXPPXMGRAXXXHXPPPP 640
PG PP M H PPPP
Sbjct: 216 PGEHMPPPPMHHEPGEHMPPPP 237
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 575 PGNXXXPPXMGRAXXXHXPPPP 640
PG PP M H PPPP
Sbjct: 229 PGEHMPPPPMHHEPGEHMPPPP 250
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 575 PGNXXXPPXMGRAXXXHXPPPP 640
PG PP M H PPPP
Sbjct: 242 PGEHMPPPPMHHEPGEHMPPPP 263
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 575 PGNXXXPPXMGRAXXXHXPPPP 640
PG PP M H PPPP
Sbjct: 255 PGEHMPPPPMHHEPGEHMPPPP 276
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 575 PGNXXXPPXMGRAXXXHXPPPP 640
PG PP M H PPPP
Sbjct: 268 PGEHMPPPPMHHEPGEHMPPPP 289
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 575 PGNXXXPPXMGRAXXXHXPPPP 640
PG PP M H PPPP
Sbjct: 281 PGEHMPPPPMHHEPGEHMPPPP 302
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 575 PGNXXXPPXMGRAXXXHXPPPP 640
PG PP M H PPPP
Sbjct: 294 PGEHMPPPPMHHEPGEHMPPPP 315
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 575 PGNXXXPPXMGRAXXXHXPPPP 640
PG PP M H PPPP
Sbjct: 307 PGEHMPPPPMHHEPGEHMPPPP 328
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 575 PGNXXXPPXMGRAXXXHXPPPP 640
PG PP M H PPPP
Sbjct: 320 PGEHMPPPPMHHEPGEHMPPPP 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,253
Number of Sequences: 5004
Number of extensions: 27825
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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