Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O21
         (981 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            27   1.1  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    27   1.1  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    26   1.5  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    25   2.6  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   6.0  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +2

Query: 836 PPLRKKXXPXXPXPPPAXXGXPXPREXGGXXQTPGGXXXPPP 961
           P L     P  P PPP     P P   GG    P G   P P
Sbjct: 574 PNLPNAQPPPAPPPPPPMGPPPSPL-AGGPLGGPAGSRPPLP 614



 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +3

Query: 864 PXPXPXPPGXGPPXPGXGAXXXKXPGGXPXPPPXRG 971
           P P P PP   PP P  G       G  P  P   G
Sbjct: 583 PAPPPPPPMGPPPSPLAGGPLGGPAGSRPPLPNLLG 618



 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +2

Query: 596 PXMGRAXXXHXPPPPPXXGNXPQK-XGXPPXXXXXAKPP 709
           P +  A     PPPPP  G  P    G P      ++PP
Sbjct: 574 PNLPNAQPPPAPPPPPPMGPPPSPLAGGPLGGPAGSRPP 612



 Score = 25.4 bits (53), Expect = 2.6
 Identities = 21/76 (27%), Positives = 22/76 (28%)
 Frame = +2

Query: 425 PPPRXXGAXXXXXSQNXPXPPXGXXGVFXXNHXITARXKPXXPQRAXXXAPGNXXXPPXM 604
           PPP   GA      Q  P P       F   +    R     P       P     PP M
Sbjct: 532 PPPPPGGAVLNIPPQFLPPPLNLLRAPFFPLNPAQLRFPAGFPNLPNAQPPPAPPPPPPM 591

Query: 605 GRAXXXHXPPPPPXXG 652
           G       PPP P  G
Sbjct: 592 G-------PPPSPLAG 600


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +3

Query: 597 PQWAGPXXPXXXPPPPXXXTXPKXGXSPPXP 689
           P  AGP  P    PPP     P+ G  P  P
Sbjct: 66  PFTAGPPKPNISIPPPTMNMPPRPGMIPGMP 96



 Score = 26.6 bits (56), Expect = 1.1
 Identities = 18/54 (33%), Positives = 18/54 (33%)
 Frame = +3

Query: 810 PXXPXXGXPPPXXKXTXXPXPXPXPPGXGPPXPGXGAXXXKXPGGXPXPPPXRG 971
           P  P    PPP       P   P  PG  P   G        P G P PPP  G
Sbjct: 71  PPKPNISIPPPTMNMPPRPGMIPGMPGAPPLLMG--------PNG-PLPPPMMG 115


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 19/64 (29%), Positives = 19/64 (29%)
 Frame = +2

Query: 530 ARXKPXXPQRAXXXAPGNXXXPPXMGRAXXXHXPPPPPXXGNXPQKXGXPPXXXXXAKPP 709
           AR  P  P       P     PP  G       P PP   G  PQ  G  P       PP
Sbjct: 179 ARPNPGMPPGPQMMRPPGNVGPPRTGTPTQ---PQPPRPGGMYPQPPGV-PMPMRPQMPP 234

Query: 710 XXAP 721
              P
Sbjct: 235 GAVP 238



 Score = 25.4 bits (53), Expect = 2.6
 Identities = 15/46 (32%), Positives = 16/46 (34%)
 Frame = +3

Query: 834 PPPXXKXTXXPXPXPXPPGXGPPXPGXGAXXXKXPGGXPXPPPXRG 971
           P P       P P   P    P  P  GA     PG  P PP  +G
Sbjct: 209 PQPPRPGGMYPQPPGVPMPMRPQMP-PGAVPGMQPGMQPRPPSAQG 253



 Score = 25.4 bits (53), Expect = 2.6
 Identities = 15/55 (27%), Positives = 16/55 (29%)
 Frame = +1

Query: 472 PPXPPXXRGXGFPXKPRDNRPXKTNXXPKGXXXGAXXPXXXPXNGPGPXXPXAXP 636
           PP PP     G P  P           P G    +  P      G GP    A P
Sbjct: 297 PPRPPMPMQGGAPGGPPQGMRPNFYNRPMGDPQTSRPPSGNDNMGGGPPPSSATP 351


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 647 PGGGGXAXGXXGPG 606
           PGGGG + G  GPG
Sbjct: 212 PGGGGGSSGGPGPG 225


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +3

Query: 876 PXPPGXGPPXPGXGAXXXKXPGGXPXPPPXRG 971
           P PPG   P    G      P G P  P   G
Sbjct: 718 PGPPGFNGPKGDKGLPGLAGPAGIPGAPGAPG 749


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,172
Number of Sequences: 2352
Number of extensions: 10335
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 107296839
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)