Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O21
         (981 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.60 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   1.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.60
 Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
 Frame = +3

Query: 819 PXXGXPPPXXKXTXXPXPXPXPPGXG-PPXPGXGAXXXKXPGGXPXPPP 962
           P  G P P       P   P  P  G PP P  G      PGG P  PP
Sbjct: 16  PSSGAPGPQPS----PHQSPQAPQRGSPPNPSQG----PPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/33 (30%), Positives = 11/33 (33%)
 Frame = +2

Query: 623 HXPPPPPXXGNXPQKXGXPPXXXXXAKPPXXAP 721
           H  P  P  G+ P     PP       PP   P
Sbjct: 28  HQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
 Frame = +1

Query: 469 KPPXPPXXRGXGFPXKPRDNRPXKTN--XXPKGXXXGAXXPXXXPXNGPGPXXPXAXPPP 642
           +PP P   R      +P +NRP   +    P         P   P N      P   PP 
Sbjct: 81  RPPHPRLRREAELEAEPGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPH 140

Query: 643 P 645
           P
Sbjct: 141 P 141



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
 Frame = +1

Query: 469 KPPXPPXXRGXGFPXKPRDNRPXKTN--XXPKGXXXGAXXPXXXPXNGPGPXXPXAXPPP 642
           +PP P   R      +P +NRP   +    P         P   P N      P   PP 
Sbjct: 137 RPPHPRLRREAELEAEPGNNRPVYISQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPH 196

Query: 643 P 645
           P
Sbjct: 197 P 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,211
Number of Sequences: 438
Number of extensions: 6280
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32411652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)