Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O19
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    39   0.001
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    36   0.010
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    29   0.67 
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    28   1.6  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   3.6  
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    26   8.3  

>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 19/86 (22%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = +3

Query: 321 DIQRTLKFGSIGFFIGGPALRTWYGVLNKYVGSQGKIVTIK-KVFLDQFLFAPSFLCILL 497
           D+ RT+++ + G  +  P    W+  L+  + ++   + I  +V LDQF+FAP  +    
Sbjct: 88  DVHRTIRYAAYGLCLT-PIQFRWFVALSNVIQTENPFIAIVLRVALDQFIFAPLGIVFFF 146

Query: 498 ISVAALQRKTWDIIXVDLKSNYFDVL 575
           + +   + K+++ +    + +Y+  L
Sbjct: 147 LFMGITECKSYERLKSYFRKHYWPTL 172



 Score = 29.1 bits (62), Expect = 0.89
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 607 ILNFYYVPLHYQVXVVXIVAXFWXTYLSWK 696
           + NF +VPL  QV     V+  W  YLS K
Sbjct: 184 LFNFTFVPLVLQVIFANAVSMVWTAYLSLK 213


>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 206

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +3

Query: 324 IQRTLKFGSIGFFIGGPALRTWYGVLN-KYVGSQGKIVTIKKVFLDQFLFAP 476
           I+R L+F + GF I  P    W  +L+ K+   +G I  +K+V LDQ +FAP
Sbjct: 66  IKRVLQFVTFGFAIS-PFQFRWLRLLSAKFPIEKGAINVVKRVLLDQAVFAP 116



 Score = 32.7 bits (71), Expect = 0.072
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 610 LNFYYVPLHYQVXVVXIVAXFWXTYLSWK 696
           +NF+ +PL YQ+     VA FW  +LS K
Sbjct: 162 VNFWLMPLQYQMPFACTVAIFWNIFLSLK 190


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +3

Query: 429 IVTIKKVFLDQFLFAPSFLCI--LLISVAALQRKTWDIIXVDLKSNYFDVLXPIITYGL- 599
           +VT+KK F D+++F P  + +  L+     ++ +   I+ V  ++  FD +  ++T    
Sbjct: 50  MVTLKKAFFDKYIFQPDSVLLTGLMTPTIRIRTQVKPILSV-FRNKIFDFIPTVVTTNSK 108

Query: 600 -GYNSK 614
            GY S+
Sbjct: 109 NGYGSE 114


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 168 WISIIPNE*LLLYPSFVYFIWFVDRSLNTLQKFKR 64
           WI    N+   LYPSF+  +W+V + L+T  K  R
Sbjct: 135 WIDF-DNDYKTLYPSFMESVWWVFKELHTKGKVYR 168


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 206 LIIFKETISHFLFGFLLYLMNNFYYILVLCISY 108
           L+++   +S FLFG+L +   + + I+ +CI Y
Sbjct: 158 LVLYTAVMS-FLFGYLRFGFLSLFIIMAVCIQY 189


>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 387 WYGV-LNKYVGSQGKIVTIKKVFLDQFLFAPSFLCILLISVAALQR 521
           W  V ++  + S G +  IKKVF +   F PS L +L  + AAL++
Sbjct: 74  WANVGIDPSIFSWGLVREIKKVFNNSDEFQPSPLTLLSKAYAALKK 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,146
Number of Sequences: 5004
Number of extensions: 53075
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)