Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O19
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0180 - 1335825-1335980,1336584-1336670,1336767-1336859,133...    69   4e-12
11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143...    69   5e-12
01_01_0899 - 7085140-7085539,7086777-7086868,7088098-7088187           31   1.2  
04_04_1206 + 31727931-31728048,31728492-31728538,31728782-317289...    29   3.8  

>12_01_0180 -
           1335825-1335980,1336584-1336670,1336767-1336859,
           1336985-1337057,1337153-1337247,1337917-1338004,
           1338135-1338424
          Length = 293

 Score = 69.3 bits (162), Expect = 4e-12
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
 Frame = +3

Query: 165 SKQKMTYRFF-KYYQEFLRRRPYLVQAIQTGGLMATGDVISQVIIEKTYWRDTDIQRTLK 341
           +K +M +R    +Y   L + P   +A+ +  L  TGD+I Q+ I+K      D++RT  
Sbjct: 85  AKGEMDWRLLLAWYLLALDKHPITTKAVTSAVLTLTGDLICQLAIDKV--PKLDLKRTFV 142

Query: 342 FGSIGFFIGGPALRTWYGVLNKYVGSQGKIVTIKKVFLDQFLFAPSFLCILLISVAALQR 521
           F  +G  + GP L  WY  L+K V   G    I ++ LDQF+F+P F+ + +  +  L+ 
Sbjct: 143 FTFLGLVLVGPTLHVWYLYLSKLVMINGASGAIARLLLDQFIFSPIFIGVFMSLLVTLEG 202

Query: 522 K 524
           K
Sbjct: 203 K 203


>11_01_0180 -
           1431758-1431838,1431975-1432061,1432180-1432230,
           1432275-1432367,1432496-1432568,1432657-1432751,
           1433428-1433515,1433647-1433936
          Length = 285

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
 Frame = +3

Query: 165 SKQKMTYRFF-KYYQEFLRRRPYLVQAIQTGGLMATGDVISQVIIEKTYWRDTDIQRTLK 341
           +K  M +R    +Y   L + P   +A+ +  L  TGD+I Q+ I+K      D++RT  
Sbjct: 85  AKGAMDWRLLLAWYLLALDKHPITTKAVTSAVLTLTGDLICQLAIDKV--PKLDLKRTFV 142

Query: 342 FGSIGFFIGGPALRTWYGVLNKYVGSQGKIVTIKKVFLDQFLFAPSFLCILLISVAALQR 521
           F  +G  + GP L  WY  L+K V   G    I ++ LDQF+F+P F+ + +  +  L+ 
Sbjct: 143 FTFLGLVLVGPTLHVWYLYLSKLVTINGASGAIARLLLDQFIFSPIFIGVFMSLLVTLEG 202

Query: 522 K 524
           K
Sbjct: 203 K 203



 Score = 33.1 bits (72), Expect = 0.31
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 610 LNFYYVPLHYQVXVVXIVAXFWXTYLSWK 696
           LNFY+VP  +QV     VA  W   LS+K
Sbjct: 249 LNFYFVPQKFQVLAANFVALAWNVILSFK 277


>01_01_0899 - 7085140-7085539,7086777-7086868,7088098-7088187
          Length = 193

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +3

Query: 348 SIGFFIGGPALRTWYGVLNKYVGSQGKIVTIK----KVFLDQFLFAPSFLCILLISVAAL 515
           S GF   GP    WY  L++++  + +  T K    KV  D  LF P  L +    V   
Sbjct: 48  SFGFAFVGPVGHYWYEYLDRFILRRYQPKTFKFVASKVAADGLLFGPVDLLLFFSYVGLA 107

Query: 516 QRKTWDIIXVDLKSNYFDVL 575
             ++ + +  D+K ++   L
Sbjct: 108 SGRSVEQVKDDVKRDFIPAL 127


>04_04_1206 +
           31727931-31728048,31728492-31728538,31728782-31728906,
           31729067-31729133,31729221-31729283,31729429-31729498,
           31729751-31729770,31729840-31729956,31730046-31730227,
           31730586-31730640,31731604-31731697,31731791-31731900,
           31733167-31733193,31733510-31733701
          Length = 428

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 288 VIIEKTYWRDTDIQRTLKFGSIGFFIGGPAL 380
           V I+  + R TD+ + L  G+ G FIG P L
Sbjct: 185 VFIDSGFRRGTDVFKALALGASGVFIGRPVL 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,975,934
Number of Sequences: 37544
Number of extensions: 284655
Number of successful extensions: 490
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)