Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O19
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical pr...    60   2e-09

>Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical
           protein T18D3.9 protein.
          Length = 181

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
 Frame = +3

Query: 210 FLRRR----PYLVQAIQTGGLMATGDVISQVIIEKTYWRDTDIQRTLKFGSIGFFIGGPA 377
           F+RRR    P   Q    G +  +GD ++Q +     W   D  RT +F  +      P+
Sbjct: 6   FIRRRLATNPLSTQMCIAGTISGSGDCLAQYLSHNQEW---DRWRTARFSFLSSCFMAPS 62

Query: 378 LRTWYGVLNKYVGSQGKIVTIKKVFLDQFLFAPSFLCILLISVAALQ----RKTWDIIXV 545
           L  W+ +L K  G+   ++ +KK+ +DQ  F+P F   +L ++  LQ     K+WD++  
Sbjct: 63  LFIWFRLLEKVKGNNKSLLLVKKLCIDQLCFSPCFNAAILFNLRLLQHQSAEKSWDLLKE 122

Query: 546 D 548
           D
Sbjct: 123 D 123



 Score = 35.1 bits (77), Expect = 0.068
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +1

Query: 607 ILNFYYVPLHYQVXVVXIVAXFWXTYLSW 693
           ++N  +VPL+Y+V +  +VA FW  YLS+
Sbjct: 140 VVNLCFVPLNYRVILNQVVAFFWNCYLSY 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,703,320
Number of Sequences: 27780
Number of extensions: 289744
Number of successful extensions: 612
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)