Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O14
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    40   4e-04
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   2.7  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   4.6  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    26   6.1  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   6.1  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    26   6.1  
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    26   8.1  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    26   8.1  

>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
 Frame = +1

Query: 100 AGLLFFAGWWFIIDAASVYPGDLPNAAHVCGV------MATLSMIMVNSVSNAQVRGET- 258
           AG++F +  W  +DAA     D     H+  +       + L +++VNS+  +++ G++ 
Sbjct: 28  AGIMFASAVWVFVDAALYSAFDYARNLHITFIDWIPFLCSILGIVIVNSIDKSRLSGDSF 87

Query: 259 -YTGGCMGPRGARLWLFLGFVVGFASLIAACWILFANYVNASSSKHAWPGVGLFMQNAFI 435
            YT   +  R AR  LF+GF +    L  +  +    YV A      + G  L M +A I
Sbjct: 88  AYTDESLA-RKARFILFIGFALLAGGLGGSFTVFILKYVVA-----GYEGKSLLMGSANI 141

Query: 436 FAGSLVFKFGRTEDLW 483
            + +++F    T  LW
Sbjct: 142 IS-NILFMISATA-LW 155


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/71 (28%), Positives = 28/71 (39%)
 Frame = -2

Query: 473 SVRPNLNTRDPAKMKAFCMNKPTPGQACLEELALT*FAKSIQQAAMRDAKPTTNPRKSQS 294
           S  PN +   PA   +   N P+   A    LA T    +        +  ++NPR S  
Sbjct: 375 STFPNPSVASPAFPNSSTSN-PSTAPASASPLASTLKPSTANDTNGSSSSSSSNPRTSSP 433

Query: 293 LAPRGPMQPPV 261
           LA     +PPV
Sbjct: 434 LASNAENKPPV 444


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 295 LWLFLGFVVGFASLIAACWILFANYV 372
           LW   G ++GFA  I A  ++ AN++
Sbjct: 675 LWRNCGIILGFAIFILASSLILANFI 700


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 313 FVVGFASLIAACWILFAN-YVNASSSKHAW 399
           F++G+ S  AA W+ F   +++ S  K  W
Sbjct: 236 FIIGYVSTFAAYWLGFCGIFLDYSRRKRVW 265


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 205 LSMIMVNSVSNAQVRGETYTGGCMGPRGARL--WLFLGFVVGFASLIAACWILF 360
           L+ + V S  +    G   TG    P+ + L  W +L  + G  S I+A WILF
Sbjct: 170 LAYLYVCSCFSGAFGGLIATGLTKIPKSSGLPNWGWLYIIEGLISAISALWILF 223


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 369 IVRKEYPAGSNEGRKTNNESKEEPKSGTTRSHATTCV 259
           + + E PA  +     N  SKE  K  +T  H TT V
Sbjct: 278 LAKNESPADVSNNESGNESSKEPDKEHSTPIHPTTPV 314


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 204 PVNDNGQFGVKCTGSWRNIHRWLHGTAWCQTLAL 305
           P NDNG F V  + S +  ++  H  ++ +T A+
Sbjct: 379 PSNDNGSFNVSSSSSSQTSNKKRHDHSYNETAAI 412


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 422 CMNKPTPGQACLEELALT*FAKSIQQAAM 336
           CM  P   +AC+++L+ T F  +++  A+
Sbjct: 225 CMAHPETLEACIKDLSATTFVATVESVAL 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,758
Number of Sequences: 5004
Number of extensions: 53730
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)