Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_O14
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0357 - 16933446-16933512,16933895-16934047,16935341-169354... 55 7e-08
02_04_0283 - 21577324-21577336,21577631-21577645,21578617-215787... 46 4e-05
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 32 0.52
08_02_0962 - 23064922-23064952,23065045-23065175,23066839-230668... 30 2.8
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 29 3.7
03_02_0850 + 11775232-11776077,11776761-11777321 29 3.7
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 29 4.9
07_03_0607 + 19916946-19917479,19917543-19918010,19918092-199184... 28 8.5
>09_04_0357 -
16933446-16933512,16933895-16934047,16935341-16935440,
16935540-16935675
Length = 151
Score = 55.2 bits (127), Expect = 7e-08
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Frame = +1
Query: 97 LAGLLFFAGWWFIIDAASVYPGDLPNAAHVCGVMATLSMIMVNSVSNAQVRGETYTG-GC 273
+AG +F AGWWF +DA + ++ G+ A+L+ +M N+V+ ++ + Y+ G
Sbjct: 15 VAGAVFGAGWWFWVDAVVCSSVQVSFLHYLPGIFASLAALMFNAVNKDEIGYDYYSPYGD 74
Query: 274 MGPRGARLWLFLGFVVGFASLIAACWILFANYVNASSSKHAWPGVGLFMQ 423
+LWLF+ +VV F L + +L + + W GV +Q
Sbjct: 75 DSEWRVKLWLFVAYVVSFVCLAGSVGMLVQDAL-TDKGPSVWTGVAGVLQ 123
>02_04_0283 -
21577324-21577336,21577631-21577645,21578617-21578769,
21579557-21579619,21579728-21579824,21579934-21580075
Length = 160
Score = 46.0 bits (104), Expect = 4e-05
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 21/134 (15%)
Frame = +1
Query: 97 LAGLLFFAGWWFIIDAASVYPGDLPNAAHVCGVMATLSMIMVNSVSNAQVRGETYT---- 264
+AG +F GWWF +DA +P ++ G+ A+ + +M N V Y+
Sbjct: 17 VAGAVFGVGWWFWVDAVVCSAAAVPFLHYLPGLFASFAALMFNCVKREDANYNYYSPYDD 76
Query: 265 ------GG-----------CMGPRGARLWLFLGFVVGFASLIAACWILFANYVNASSSKH 393
G C +LWLF+ +VV F SL A L + + +
Sbjct: 77 SEWRSVGNFSHDLLIHGYQCYRCLWLKLWLFVSYVVSFVSLAGAVGFLVQDAL-TDTGPS 135
Query: 394 AWPGVGLFMQNAFI 435
AW GV +Q+ F+
Sbjct: 136 AWTGVAGVLQSVFV 149
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 32.3 bits (70), Expect = 0.52
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Frame = -2
Query: 350 QQAAMRDAKPTTNPRKSQSLAPRGPMQP--PVYVSPRTCAFDTELTIIIDRVA-ITPHT* 180
++ A +++ P + P+ S P P P +S T A I V I P T
Sbjct: 280 EETASQESNPESAPQTPPSKVGSQPSVPVVPTTISTSTAAVSVSAETISSPVRPIVPTTT 339
Query: 179 AALGRSPGYTEAASIINHHPAKNSSPANIDAIMFRFSPLSEPKRPKS 39
AA+ P A S + PA S+PAN + + +S P R S
Sbjct: 340 AAV--LPASVTARSAPENIPAVTSAPANSSSTLKDDDNMSFPSRRSS 384
>08_02_0962 -
23064922-23064952,23065045-23065175,23066839-23066864,
23067176-23067311
Length = 107
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 76 RNIMASILAGLLFFAGWWFIIDA 144
R I+ +AG +F GWWF +DA
Sbjct: 8 RGILGPGVAGAVFGVGWWFWVDA 30
>08_01_0090 -
649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 399 PGVFGGTSINIVRKEYP--AGSNEGRKTNNESKEEPKSGTTRSHA 271
P ++++V E P A +N R N +++EP+SG TRS A
Sbjct: 95 PDEAASVAVSVVDVERPVAAPANWRRAPNGAAEQEPRSGGTRSEA 139
>03_02_0850 + 11775232-11776077,11776761-11777321
Length = 468
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 97 LAGLLFFAGWWFIIDAASVYPGDL 168
+A LLFF W+ ++D+A+V P L
Sbjct: 23 IAALLFFFSWYLLLDSAAVTPEPL 46
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +1
Query: 112 FFAGWW--FIIDAASVYPGDL 168
F GWW ++DAA VYPG++
Sbjct: 173 FLFGWWDALMVDAAVVYPGEV 193
>07_03_0607 +
19916946-19917479,19917543-19918010,19918092-19918479,
19919025-19919076,19919294-19919333
Length = 493
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -2
Query: 188 HT*AALGRS-PGYTEAASIINHHPA 117
HT ALGR P TE I++HHPA
Sbjct: 163 HTDMALGRYVPFITEERGIVHHHPA 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,294,299
Number of Sequences: 37544
Number of extensions: 369141
Number of successful extensions: 1028
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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