Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O14
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    26   0.40 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.40 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.52 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.92 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   2.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   4.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   8.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 294 TLALPWIRCWFCV 332
           TLA+ WI C+FC+
Sbjct: 212 TLAVVWIMCYFCI 224


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 294 TLALPWIRCWFCV 332
           TLA+ WI C+FC+
Sbjct: 265 TLAVVWIMCYFCI 277


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 58  SESGEKRNIMASILAGL-LFFAGWWFIIDAASVYPGDLPNAAHVCGVMATLSMIMVNSVS 234
           S+SGEK ++  SIL  L +FF     II   S+    L        V+ TLS+++  +V 
Sbjct: 262 SDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVL 321

Query: 235 NAQVR 249
           N   R
Sbjct: 322 NVNFR 326


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 294 TLALPWIRCWFCV 332
           TL L WI C+FC+
Sbjct: 179 TLLLVWILCYFCI 191


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +1

Query: 58  SESGEKRNIMASILAGLLFFAGWWFIIDAASVYPGDLPNAAHVCGVMATLSMIMV 222
           S+SGEK ++ +SIL  L  F    F++ A  + P  L  A  + G     +MI+V
Sbjct: 275 SDSGEKVSLCSSILLSLTVF----FLLLAEIIPPTSL--AIPLLGKYLLFTMILV 323


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = -1

Query: 498 ILSLRPKILSASELKHERSSENEGILHEQTHSRPGVFGGTSINIVRKEYPAGSNEGRKTN 319
           +++ R + L A+E ++ R   N  +L E+  S          N V  + P+   E   T+
Sbjct: 224 VIASRHRNLEATESENVRPRRN--VLIERAKSIRARRTECVTNSVTCDRPSDEAEPSSTS 281

Query: 318 NESKEEPKSGTTRSHATTCV 259
                  KSG  RSH  +C+
Sbjct: 282 K------KSGIVRSHQQSCI 295


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 218 WSIRCQMHRFVEKHTQVVAW 277
           + + C +HR    H Q +AW
Sbjct: 542 YCVACGLHRDTYIHAQQIAW 561


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +1

Query: 277 GPRGARLWLFLGFVVGFASLIAACWILFANYVN 375
           GPR    W+    +   AS++  C I    Y++
Sbjct: 94  GPRFCDTWIAFDVMCSTASILNLCAISLDRYIH 126


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 107 CCFSQDGGL 133
           CCF+QD GL
Sbjct: 446 CCFAQDDGL 454


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/11 (81%), Positives = 9/11 (81%), Gaps = 2/11 (18%)
 Frame = +3

Query: 189 WS--DGHPVND 215
           WS  DGHPVND
Sbjct: 64  WSTADGHPVND 74


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/11 (81%), Positives = 9/11 (81%), Gaps = 2/11 (18%)
 Frame = +3

Query: 189 WS--DGHPVND 215
           WS  DGHPVND
Sbjct: 64  WSTADGHPVND 74


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 325 FASLIAACWILFANYV 372
           FA L    WI+FA Y+
Sbjct: 413 FAVLNVTYWIMFAEYI 428


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/30 (23%), Positives = 11/30 (36%)
 Frame = +3

Query: 240 TGSWRNIHRWLHGTAWCQTLALPWIRCWFC 329
           + +W     W+ G  WC       +  W C
Sbjct: 122 SATWEVFKVWIFGDLWCSIWLA--VDVWMC 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,204
Number of Sequences: 438
Number of extensions: 3949
Number of successful extensions: 20
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)