Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_O13
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 106 5e-24
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 50 6e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 42 9e-05
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 42 1e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 40 4e-04
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 37 0.003
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 36 0.008
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 35 0.018
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 34 0.031
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 34 0.031
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 33 0.071
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 33 0.071
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 33 0.071
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 32 0.094
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 32 0.12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 30 0.38
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 30 0.50
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 29 0.88
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 29 1.2
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 28 1.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.7
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 4.7
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 4.7
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 6.2
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 6.2
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 8.2
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 26 8.2
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 26 8.2
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 8.2
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 106 bits (254), Expect = 5e-24
Identities = 46/94 (48%), Positives = 63/94 (67%)
Frame = +1
Query: 304 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 483
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 484 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 585
FP+YV + VK +G++ PTPIQ Q WP+AMSG++
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRD 161
Score = 45.2 bits (102), Expect = 1e-05
Identities = 18/26 (69%), Positives = 24/26 (92%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHIN 656
+++VG++ TGSGKTL+Y LPAIVHIN
Sbjct: 160 RDMVGISATGSGKTLSYCLPAIVHIN 185
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 662 PPIRRGDGPIALVLAPTXELAXQF-XXLLQIXXHILXXXTCVXGGAXK 802
P + GDGPI LVLAPT ELA Q + TCV GG +
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPR 235
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 49.6 bits (113), Expect = 6e-07
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +1
Query: 319 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 495
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 496 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 585
+ ++GY++PT IQAQ P SG++
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRD 457
Score = 39.9 bits (89), Expect = 5e-04
Identities = 15/29 (51%), Positives = 24/29 (82%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHINNXR 665
++++GVA+TGSGKT+A++LP HI + R
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Score = 35.9 bits (79), Expect = 0.008
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 665 PIRRGDGPIALVLAPTXELAXQFXXLLQIXXHILXXXT-CVXGGA 796
P++ G+GPIA+++ PT ELA Q + +L C GGA
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGA 529
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 42.3 bits (95), Expect = 9e-05
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +1
Query: 406 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 576
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 577 GKN 585
G++
Sbjct: 202 GRD 204
Score = 37.1 bits (82), Expect = 0.003
Identities = 13/26 (50%), Positives = 24/26 (92%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHIN 656
+++VG+A+TGSGKT+A+ +PA+ ++N
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLN 228
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 41.9 bits (94), Expect = 1e-04
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = +1
Query: 415 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 585
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKD 288
Score = 39.5 bits (88), Expect = 6e-04
Identities = 15/26 (57%), Positives = 23/26 (88%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHIN 656
K+L+G+A+TGSGKT A+I+P I+ I+
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAIS 312
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = +2
Query: 662 PPIRRGD---GPIALVLAPTXELAXQ 730
PP+ + GP A+VLAPT ELA Q
Sbjct: 315 PPLTESNMHLGPYAVVLAPTRELAQQ 340
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.3 bits (90), Expect = 4e-04
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 430 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 594
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++ +A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAI 644
++L+ AQTGSGKT ++ P +
Sbjct: 207 RDLMACAQTGSGKTAGFLFPIL 228
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.1 bits (82), Expect = 0.003
Identities = 13/27 (48%), Positives = 23/27 (85%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHINN 659
+++VG+A+TGSGKT A+++P I H+ +
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKS 133
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +1
Query: 472 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 585
F+ + + + G+K PTPIQ + P+ + G++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRD 108
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 35.9 bits (79), Expect = 0.008
Identities = 17/37 (45%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHI-NNXRLFGEVMV 686
++++G+AQTGSGKT A+ LP I + NN F V++
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVL 120
Score = 30.3 bits (65), Expect = 0.38
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 472 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 585
F+E D + + + +G+K PTPIQ + P+ ++ ++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRD 85
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 34.7 bits (76), Expect = 0.018
Identities = 13/25 (52%), Positives = 22/25 (88%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHI 653
++++G A+TGSGKTLA+I+P I ++
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENL 101
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.9 bits (74), Expect = 0.031
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 472 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAK 618
FE+ + G+ G++ P+PIQ + PIA+SG++ LA K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/48 (18%), Positives = 26/48 (54%)
Frame = +3
Query: 522 GLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHINNXR 665
G +R + + ++++ A+ G+GKT A+++P++ ++ +
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKK 110
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 33.9 bits (74), Expect = 0.031
Identities = 12/22 (54%), Positives = 20/22 (90%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAI 644
++++G A+TGSGKTLA+++P I
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI 148
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 32.7 bits (71), Expect = 0.071
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAI 644
K+LV A+TGSGKT AY++P +
Sbjct: 52 KDLVAQARTGSGKTAAYLIPIL 73
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +1
Query: 442 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 594
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+ +A
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 32.7 bits (71), Expect = 0.071
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAI 644
K++VG A TGSGKT A+I+P +
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPIL 318
Score = 30.3 bits (65), Expect = 0.38
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 472 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 585
F+ N + +G+ +G++ PT IQ + P+A+ GK+
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKD 298
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 32.7 bits (71), Expect = 0.071
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILP 638
K+LV A TGSGKTLAY+LP
Sbjct: 39 KDLVVEAVTGSGKTLAYLLP 58
Score = 31.1 bits (67), Expect = 0.22
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 472 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 585
F+ N +++ V G+K+ TP+QA P+ + K+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKD 40
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 32.3 bits (70), Expect = 0.094
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +3
Query: 597 AQTGSGKTLAYILPAI 644
AQTGSGKTLAY+LP +
Sbjct: 185 AQTGSGKTLAYLLPIV 200
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 31.9 bits (69), Expect = 0.12
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 582 ELVGVAQTGSGKTLAYILPAIVH 650
+++G A TGSGKTLA+ +P + H
Sbjct: 161 DIIGKADTGSGKTLAFGIPILEH 183
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 30.3 bits (65), Expect = 0.38
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAI 644
++L+ A TGSGKT+AY+ P +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPIL 105
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 29.9 bits (64), Expect = 0.50
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 406 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 555
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 29.1 bits (62), Expect = 0.88
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAI 644
+ +G A+TGSGKT A+ LP I
Sbjct: 45 RNCIGGAKTGSGKTAAFALPII 66
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = -1
Query: 223 NYRRICCLLQIWNHRFHGYYSSYQT*LFFGFS*RCLFKLWISF*RRV--HLDH 71
NY I C L +WN Y +F + +++W+ F V H DH
Sbjct: 180 NYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWLEFSELVVQHPDH 232
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +3
Query: 597 AQTGSGKTLAYILPAI 644
A TGSGKTL+Y++P +
Sbjct: 180 AATGSGKTLSYVIPIV 195
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +3
Query: 585 LVGVAQTGSGKTLAYILPAIV 647
L+ V TG GK+L++++PA++
Sbjct: 1209 LITVLPTGGGKSLSFLIPALI 1229
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +3
Query: 585 LVGVAQTGSGKTLAYILPAIV 647
L+ V TG GK+L++++PA++
Sbjct: 1209 LITVLPTGGGKSLSFLIPALI 1229
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 534 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 409
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 4.7
Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Frame = -2
Query: 570 SYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISILFDFIW* 391
+Y L +G H L ++ + F K ++ + + SY++ + + +W
Sbjct: 686 AYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVLILCPVHPIVWK 745
Query: 390 SFENCRMWIIKVFVERLE*NRIPIWAS----HVLPSREFFFPTKASRSSKSIATVAKPRR 223
+ F L+ NR+ I AS H+ ++ F + ++ + R
Sbjct: 746 G--RIEKVDVPDFSVDLKTNRVRIIASNKREHLQAAKSVFQSISGDLVTLAVECRSSITR 803
Query: 222 IIAEFVASSKFGTTVSTAII 163
+ EF+ SK +S+ ++
Sbjct: 804 VYKEFIRLSKLCMRISSTVV 823
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 394 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 525
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 394 PYEVEEYRNKHEVTVS 441
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 369 WIIKVFVERLE*NRIPIWASHVLPSREF 286
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = -1
Query: 646 TIAGKM*ANVLPEPVWATPTNSFQT*LSASLELEWASVLCNPLSLHLVAHNQENL 482
++A + A +LP P ++P+++F+T S E + C+P H A+ E++
Sbjct: 4 SVATSLKAEILPSPRTSSPSSNFKT--CVSNENGCINCRCSPSEPHESANVDESV 56
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 606 GSGKTLAYILPAIVHINNXRLFGEVMVRLLWSWRL 710
GSG+TLA + P ++ +N + LW+W L
Sbjct: 842 GSGRTLANLAPMMLITHNASHVPPRPSKSLWNWLL 876
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIV 647
K++ + TG GK+L Y LPA++
Sbjct: 535 KDVFILMPTGGGKSLCYQLPAVI 557
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,424
Number of Sequences: 5004
Number of extensions: 61644
Number of successful extensions: 228
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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