Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_O13
(883 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 70 2e-12
Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical pr... 62 5e-10
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 59 5e-09
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 52 7e-07
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 44 2e-04
AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical ... 43 3e-04
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 42 6e-04
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 42 6e-04
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 42 6e-04
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 40 0.003
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 37 0.017
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 35 0.089
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 35 0.089
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 35 0.089
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 34 0.12
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 34 0.12
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 34 0.12
AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical ... 34 0.12
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 34 0.12
Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical pr... 31 0.83
U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical pr... 31 0.83
U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical pr... 31 0.83
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 31 0.83
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 31 0.83
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 30 1.9
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 30 1.9
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 30 1.9
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 30 1.9
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 30 1.9
Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical p... 29 3.3
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 29 3.3
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 29 3.3
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 29 3.3
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 29 4.4
L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical pr... 29 4.4
AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine r... 29 4.4
AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine r... 29 4.4
Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical pr... 29 5.8
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 70.1 bits (164), Expect = 2e-12
Identities = 32/93 (34%), Positives = 56/93 (60%)
Frame = +1
Query: 307 MRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEAN 486
+R DW + +L P K+FY + V +R YE++++ + ++VT+ G V P+ F EA
Sbjct: 77 LRDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEAP 136
Query: 487 FPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 585
P + + + +++PT IQ+ WPIAMSG++
Sbjct: 137 LPGQIHE-LLYGKFQKPTVIQSISWPIAMSGRD 168
Score = 41.5 bits (93), Expect = 8e-04
Identities = 15/25 (60%), Positives = 24/25 (96%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHI 653
++++ +A+TGSGKTLA++LPA+VHI
Sbjct: 167 RDIISIAKTGSGKTLAFMLPALVHI 191
Score = 37.5 bits (83), Expect = 0.013
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 671 RRGDGPIALVLAPTXELAXQFXXLLQIXXHIL-XXXTCVXGGAXK 802
+RG+GP LVL PT ELA Q + H L TC+ GGA K
Sbjct: 198 QRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASK 242
>Z81449-4|CAB03765.1| 811|Caenorhabditis elegans Hypothetical
protein C46F11.4 protein.
Length = 811
Score = 62.1 bits (144), Expect = 5e-10
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Frame = +1
Query: 319 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 498
D + Q FNKNFY+ H + + +V +N + V G++ P+ F +F
Sbjct: 216 DHSQIQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFSFDKL 275
Query: 499 VQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PK----RVPAKRWP 627
+ + ++ Y++PTPIQA P A+SG++ L K + A WP
Sbjct: 276 LMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWP 322
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/25 (64%), Positives = 23/25 (92%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHI 653
++++G+A+TGSGKT AY+ PAIVHI
Sbjct: 303 RDVLGIAKTGSGKTAAYLWPAIVHI 327
Score = 33.1 bits (72), Expect = 0.27
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 662 PPIRRGDGPIALVLAPTXELAXQ-FXXLLQIXXHILXXXTCVXGGAXK 802
P ++ G+GP+A+++ PT ELA Q F + C GG K
Sbjct: 331 PDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSK 378
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 58.8 bits (136), Expect = 5e-09
Identities = 25/58 (43%), Positives = 36/58 (62%)
Frame = +1
Query: 412 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 585
+R +++ G V P++ +EEA FPD V Q VK +GY EPTPIQ Q PI + ++
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRD 340
Score = 37.1 bits (82), Expect = 0.017
Identities = 14/27 (51%), Positives = 23/27 (85%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHINN 659
++++GVA+TGSGKT A++LP +V I +
Sbjct: 339 RDVIGVAETGSGKTAAFLLPLLVWITS 365
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 51.6 bits (118), Expect = 7e-07
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Frame = +1
Query: 307 MRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEA 483
+ + D V + F KNFY + + + EV+ YR + + +TV G++ PI+ + +
Sbjct: 250 LAQTDHSKVYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCPKPIKTWAQC 309
Query: 484 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 585
+ +K Y +PT IQAQ P MSG++
Sbjct: 310 GVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRD 343
Score = 38.3 bits (85), Expect = 0.007
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHI 653
++++G+A+TGSGKTLA++LP HI
Sbjct: 342 RDVIGIAKTGSGKTLAFLLPMFRHI 366
Score = 36.7 bits (81), Expect = 0.022
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 662 PPIRRGDGPIALVLAPTXELAXQ 730
P + GDGPIA++LAPT ELA Q
Sbjct: 370 PELEEGDGPIAVILAPTRELAMQ 392
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 43.6 bits (98), Expect = 2e-04
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 430 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 585
V +G +V PI F + + +++++ +KT GY PTP+Q P G++
Sbjct: 154 VEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRD 205
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAI 644
++L+ AQTGSGKT A+++P +
Sbjct: 204 RDLMSCAQTGSGKTAAFLVPLV 225
>AL034488-3|CAA22456.1| 504|Caenorhabditis elegans Hypothetical
protein Y54G11A.3 protein.
Length = 504
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +3
Query: 513 KDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAIVHIN 656
+ NG ++ S ++ +GV+QTGSGKTLA++LPA++HI+
Sbjct: 100 RKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHID 147
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/50 (34%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +1
Query: 439 SGVEVHNPIQYFEEANFPDYVQQG-VKTMGYKEPTPIQAQGWPIAMSGKN 585
S V++ P+ FE+A + G ++ G+++P+PIQ+Q WP+ +SG++
Sbjct: 74 STVKIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQD 123
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +1
Query: 406 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 585
++Y N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++
Sbjct: 120 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD 178
Score = 36.3 bits (80), Expect = 0.029
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHI 653
++L+ AQTGSGKT A++LP I HI
Sbjct: 177 RDLMSCAQTGSGKTAAFLLPIIQHI 201
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +1
Query: 406 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 585
++Y N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++
Sbjct: 104 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD 162
Score = 36.3 bits (80), Expect = 0.029
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHI 653
++L+ AQTGSGKT A++LP I HI
Sbjct: 161 RDLMSCAQTGSGKTAAFLLPIIQHI 185
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 41.9 bits (94), Expect = 6e-04
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +1
Query: 406 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 585
++Y N V VSG V I++F EA F V + V GY +PTP+Q P ++ ++
Sbjct: 101 DKYENI-PVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRD 159
Score = 36.3 bits (80), Expect = 0.029
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHI 653
++L+ AQTGSGKT A++LP I HI
Sbjct: 158 RDLMSCAQTGSGKTAAFLLPIIQHI 182
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 367 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV-KTMGYKEPTP 543
P + ++S + E R + ++ G + PI F E FP + + + K G PT
Sbjct: 156 PPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTA 215
Query: 544 IQAQGWPIAMSGKN 585
IQ QG P+A+SG++
Sbjct: 216 IQIQGIPVALSGRD 229
Score = 34.3 bits (75), Expect = 0.12
Identities = 10/23 (43%), Positives = 20/23 (86%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIV 647
++++G+A TGSGKT+ ++LP ++
Sbjct: 228 RDMIGIASTGSGKTMTFVLPLVM 250
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 665 PIRRGDGPIALVLAPTXELAXQFXXLL 745
P R +GP L++ P+ ELA Q L+
Sbjct: 260 PFMRSEGPFGLIIVPSRELARQIFDLI 286
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 37.1 bits (82), Expect = 0.017
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 513 KDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAI 644
KDN + +A S ++VG A+TGSGKTLA ++P +
Sbjct: 92 KDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVL 135
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 34.7 bits (76), Expect = 0.089
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 460 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 594
P + F +++ P +++ V+ GY TPIQ P+ GK+ LA
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILA 340
Score = 31.5 bits (68), Expect = 0.83
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILP 638
K+++ AQTGSGKT A++LP
Sbjct: 336 KDILACAQTGSGKTAAFLLP 355
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 34.7 bits (76), Expect = 0.089
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 460 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 594
P + F +++ P +++ V+ GY TPIQ P+ GK+ LA
Sbjct: 296 PCKSFSDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILA 340
Score = 31.5 bits (68), Expect = 0.83
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILP 638
K+++ AQTGSGKT A++LP
Sbjct: 336 KDILACAQTGSGKTAAFLLP 355
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 34.7 bits (76), Expect = 0.089
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 472 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 585
FE+ N + + GY +PTPIQ P+A++GK+
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKD 187
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +2
Query: 671 RRGDGPIALVLAPTXELAXQFXXLLQ 748
R+ DGP+AL+LAPT ELA Q L+
Sbjct: 455 RQDDGPLALILAPTRELAAQIHEALR 480
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 460 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 594
P + F EAN + +Q+ V GY + TPIQ P+ G + +A
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMA 383
Score = 31.9 bits (69), Expect = 0.62
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 582 ELVGVAQTGSGKTLAYILPAIVHI---NNXRLFGE 677
+++ AQTGSGKT A++LP + + NN GE
Sbjct: 380 DIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGE 414
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 460 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 594
P + F EAN + +Q+ V GY + TPIQ P+ G + +A
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMA 383
Score = 31.9 bits (69), Expect = 0.62
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 582 ELVGVAQTGSGKTLAYILPAIVHI---NNXRLFGE 677
+++ AQTGSGKT A++LP + + NN GE
Sbjct: 380 DIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGE 414
>AF067608-1|AAC17654.2| 544|Caenorhabditis elegans Hypothetical
protein B0511.6 protein.
Length = 544
Score = 34.3 bits (75), Expect = 0.12
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAI 644
K+++ A+TGSGKTLA++LPAI
Sbjct: 106 KDVLASAKTGSGKTLAFLLPAI 127
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 460 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 594
P + F EAN + +Q+ V GY + TPIQ P+ G + +A
Sbjct: 339 PCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMA 383
Score = 31.9 bits (69), Expect = 0.62
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 582 ELVGVAQTGSGKTLAYILPAIVHI---NNXRLFGE 677
+++ AQTGSGKT A++LP + + NN GE
Sbjct: 380 DIMACAQTGSGKTAAFLLPIMTRLIDDNNLNTAGE 414
>Z29115-1|CAA82362.1| 489|Caenorhabditis elegans Hypothetical
protein T26G10.1 protein.
Length = 489
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 510 CKDNGLQRTDAHSSSRLADSYVWKELVGVAQTGSGKTLAYILPAI 644
C+ G + + L + K+++G+A+TGSGKT A+ +P +
Sbjct: 59 CQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVL 103
>Z22177-1|CAA80151.1| 578|Caenorhabditis elegans Hypothetical
protein ZK512.2 protein.
Length = 578
Score = 31.5 bits (68), Expect = 0.83
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 582 ELVGVAQTGSGKTLAYILPAIVHINNXRL 668
++V + TGSGKTLA++LP + I N +L
Sbjct: 48 DVVVESPTGSGKTLAFVLPMMRMIQNAKL 76
>U80447-2|AAO38637.1| 579|Caenorhabditis elegans Hypothetical
protein F55F8.2b protein.
Length = 579
Score = 31.5 bits (68), Expect = 0.83
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHI 653
++++G A+TGSGKTLA+ +P + +
Sbjct: 27 QDVLGAAETGSGKTLAFGIPLVARL 51
>U80447-1|AAB37806.1| 746|Caenorhabditis elegans Hypothetical
protein F55F8.2a protein.
Length = 746
Score = 31.5 bits (68), Expect = 0.83
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHI 653
++++G A+TGSGKTLA+ +P + +
Sbjct: 194 QDVLGAAETGSGKTLAFGIPLVARL 218
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 31.5 bits (68), Expect = 0.83
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 582 ELVGVAQTGSGKTLAYILPAIVHI 653
++V A TGSGKTLA+++P ++ +
Sbjct: 775 DVVACAHTGSGKTLAFLIPFVIKL 798
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 31.5 bits (68), Expect = 0.83
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 582 ELVGVAQTGSGKTLAYILPAIVHI 653
++V A TGSGKTLA+++P ++ +
Sbjct: 775 DVVACAHTGSGKTLAFLIPFVIKL 798
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 582 ELVGVAQTGSGKTLAYILPAIVHI 653
+++ AQTGSGKT A++LP + +
Sbjct: 591 DIMACAQTGSGKTAAFLLPIMARL 614
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 472 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 594
F EAN + +++ V GY + TPIQ P+ G + +A
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMA 594
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 582 ELVGVAQTGSGKTLAYILPAIVHI 653
+++ AQTGSGKT A++LP + +
Sbjct: 591 DIMACAQTGSGKTAAFLLPIMARL 614
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 472 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 594
F EAN + +++ V GY + TPIQ P+ G + +A
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMA 594
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/22 (45%), Positives = 19/22 (86%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAI 644
K++V +++TGSGKT A+++P +
Sbjct: 62 KDVVAMSRTGSGKTAAFVIPML 83
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 454 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 594
H +++ V + ++ G+ +PTPIQ + P M GK+ +A
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVA 66
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 30.3 bits (65), Expect = 1.9
Identities = 10/22 (45%), Positives = 19/22 (86%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAI 644
K++V +++TGSGKT A+++P +
Sbjct: 62 KDVVAMSRTGSGKTAAFVIPML 83
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 454 HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 594
H +++ V + ++ G+ +PTPIQ + P M GK+ +A
Sbjct: 20 HKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVA 66
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 582 ELVGVAQTGSGKTLAYILPAIVHI 653
+++ AQTGSGKT A++LP + +
Sbjct: 591 DIMACAQTGSGKTAAFLLPIMARL 614
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 472 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 594
F EAN + +++ V GY + TPIQ P+ G + +A
Sbjct: 554 FSEANLGETMKKNVAHAGYTKTTPIQQYTLPLIHQGHDIMA 594
>Z99710-10|CAN99659.1| 222|Caenorhabditis elegans Hypothetical
protein F08A8.8 protein.
Length = 222
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +2
Query: 173 VETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKN 289
+ETV+ LE N +RL A VA E LE++ GK N
Sbjct: 71 IETVILALEAGMNLEDVRLEFAHVATREEILESVFGKLN 109
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAI 644
K ++G A+TGSGKT A+++P +
Sbjct: 127 KNIMGRARTGSGKTGAFLIPLV 148
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/21 (47%), Positives = 18/21 (85%)
Frame = +3
Query: 582 ELVGVAQTGSGKTLAYILPAI 644
+++G A+TG+GKTLA+ +P +
Sbjct: 128 DILGCARTGTGKTLAFAIPIL 148
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/21 (47%), Positives = 18/21 (85%)
Frame = +3
Query: 582 ELVGVAQTGSGKTLAYILPAI 644
+++G A+TG+GKTLA+ +P +
Sbjct: 128 DILGCARTGTGKTLAFAIPIL 148
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHI 653
+ ++ A TGSGKTLA+ LP I I
Sbjct: 164 RNVLASAPTGSGKTLAFALPVIDEI 188
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +3
Query: 603 TGSGKTLAYILPAIVH 650
TG+GK+L Y LPA+VH
Sbjct: 203 TGAGKSLCYQLPAVVH 218
>L17337-1|AAP68928.1| 593|Caenorhabditis elegans Hypothetical
protein ZK686.2 protein.
Length = 593
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 579 KELVGVAQTGSGKTLAYILPAIVHINN 659
+++ A TGSGKT+ Y+LP + + +
Sbjct: 157 RDVAIAAPTGSGKTICYVLPVLAAVGS 183
>AC006714-20|AAK29723.2| 281|Caenorhabditis elegans Serpentine
receptor, class z protein9 protein.
Length = 281
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = -2
Query: 585 ILSRHSYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISILF 406
++ R +YR N + + + Y + +I + F + + ++NLN T +L I+I+F
Sbjct: 26 LVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIF 85
Query: 405 D 403
+
Sbjct: 86 N 86
>AC006714-16|AAK29721.3| 281|Caenorhabditis elegans Serpentine
receptor, class z protein8 protein.
Length = 281
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = -2
Query: 585 ILSRHSYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISILF 406
++ R +YR N + + + Y + +I + F + + ++NLN T +L I+I+F
Sbjct: 26 LVYRKAYRFNSERNTATYPIVNSFYKKVALINALYFIESILIVVNLNVTNEWLNKIAIIF 85
Query: 405 D 403
+
Sbjct: 86 N 86
>Z68220-9|CAL64002.1| 312|Caenorhabditis elegans Hypothetical
protein T20D3.5b protein.
Length = 312
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 228 RRIIAEFVASSKFGTTVSTAIIPV 157
+++I +FVA S G T+STA P+
Sbjct: 220 QQLIGDFVAGSLLGATISTAFFPL 243
>Z68220-8|CAA92487.1| 221|Caenorhabditis elegans Hypothetical
protein T20D3.5a protein.
Length = 221
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 228 RRIIAEFVASSKFGTTVSTAIIPV 157
+++I +FVA S G T+STA P+
Sbjct: 129 QQLIGDFVAGSLLGATISTAFFPL 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,767,791
Number of Sequences: 27780
Number of extensions: 345490
Number of successful extensions: 1058
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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