Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O12
         (1138 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    93   5e-20
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    29   1.6  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    28   2.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   3.7  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.5  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 93.5 bits (222), Expect = 5e-20
 Identities = 44/73 (60%), Positives = 57/73 (78%)
 Frame = +2

Query: 143 NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 322
           N   D  S +D +TAILR+K +PN L+V++A +DDNSV+ LS   ME LQLFRGDTV++K
Sbjct: 21  NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80

Query: 323 GKRRKETVCIVLS 361
           GKRRK+TV IVL+
Sbjct: 81  GKRRKDTVLIVLT 93


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +3

Query: 147 KWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCS 320
           KW++  A+    P  S + + PT+S   + + SA TT     +RP  S   S  +    +
Sbjct: 293 KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKNRSPPINFDGT 352

Query: 321 RANAARKPFASCSQDD 368
             +AA   F+  S ++
Sbjct: 353 SYDAAGNVFSPSSSNN 368


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 168 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 281
           L + R    +   DP ++ +  Q  + T+SWH FH  +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +2

Query: 119 LDSN-N*ILNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQL 295
           L SN N  L  +A N   + L+T   +RK + N  ++ +A ++ N+  +++ A  E+ QL
Sbjct: 760 LKSNTNKFLGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQL 818

Query: 296 F 298
           +
Sbjct: 819 Y 819


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 189 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRANA 332
           SSV       S S   ++M++ + +F+    S+ +SSV T + S +N+
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNS 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,569
Number of Sequences: 5004
Number of extensions: 37129
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 605623328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)