Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O12
         (1138 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF202034-1|AAF17568.1|  799|Drosophila melanogaster endoplasmic ...   120   4e-27
AF132553-1|AAD27852.1|  801|Drosophila melanogaster BcDNA.GM0288...   120   4e-27
AF047037-1|AAC27447.1|  801|Drosophila melanogaster transitional...   120   4e-27
AE013599-984|AAF58863.1|  801|Drosophila melanogaster CG2331-PA,...   120   4e-27

>AF202034-1|AAF17568.1|  799|Drosophila melanogaster endoplasmic
           reticulum membranefusion protein protein.
          Length = 799

 Score =  120 bits (289), Expect = 4e-27
 Identities = 59/71 (83%), Positives = 68/71 (95%)
 Frame = +2

Query: 149 MADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 328
           MAD+K  +DL+TAIL+RKDRPNRLIVEEA +DDNSVV+LSQAKM++LQLFRGDTV+LKGK
Sbjct: 1   MADSKG-EDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGK 59

Query: 329 RRKETVCIVLS 361
           RRKETVCIVLS
Sbjct: 60  RRKETVCIVLS 70



 Score = 34.7 bits (76), Expect = 0.24
 Identities = 18/32 (56%), Positives = 19/32 (59%)
 Frame = +3

Query: 363 DDNCPDEXIRMKRVVXNXLRCASFLMWVSIXS 458
           DD CPDE IRM RVV N L C      VS+ S
Sbjct: 71  DDTCPDEKIRMNRVVRNNL-CVHLSDVVSVQS 101


>AF132553-1|AAD27852.1|  801|Drosophila melanogaster BcDNA.GM02885
           protein.
          Length = 801

 Score =  120 bits (289), Expect = 4e-27
 Identities = 59/71 (83%), Positives = 68/71 (95%)
 Frame = +2

Query: 149 MADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 328
           MAD+K  +DL+TAIL+RKDRPNRLIVEEA +DDNSVV+LSQAKM++LQLFRGDTV+LKGK
Sbjct: 1   MADSKG-EDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGK 59

Query: 329 RRKETVCIVLS 361
           RRKETVCIVLS
Sbjct: 60  RRKETVCIVLS 70



 Score = 34.7 bits (76), Expect = 0.24
 Identities = 18/32 (56%), Positives = 19/32 (59%)
 Frame = +3

Query: 363 DDNCPDEXIRMKRVVXNXLRCASFLMWVSIXS 458
           DD CPDE IRM RVV N L C      VS+ S
Sbjct: 71  DDTCPDEKIRMNRVVRNNL-CVHLSDVVSVQS 101


>AF047037-1|AAC27447.1|  801|Drosophila melanogaster transitional
           endoplasmic reticulumATPase TER94 protein.
          Length = 801

 Score =  120 bits (289), Expect = 4e-27
 Identities = 59/71 (83%), Positives = 68/71 (95%)
 Frame = +2

Query: 149 MADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 328
           MAD+K  +DL+TAIL+RKDRPNRLIVEEA +DDNSVV+LSQAKM++LQLFRGDTV+LKGK
Sbjct: 1   MADSKG-EDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGK 59

Query: 329 RRKETVCIVLS 361
           RRKETVCIVLS
Sbjct: 60  RRKETVCIVLS 70



 Score = 34.7 bits (76), Expect = 0.24
 Identities = 18/32 (56%), Positives = 19/32 (59%)
 Frame = +3

Query: 363 DDNCPDEXIRMKRVVXNXLRCASFLMWVSIXS 458
           DD CPDE IRM RVV N L C      VS+ S
Sbjct: 71  DDTCPDEKIRMNRVVRNNL-CVHLSDVVSVQS 101


>AE013599-984|AAF58863.1|  801|Drosophila melanogaster CG2331-PA,
           isoform A protein.
          Length = 801

 Score =  120 bits (289), Expect = 4e-27
 Identities = 59/71 (83%), Positives = 68/71 (95%)
 Frame = +2

Query: 149 MADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 328
           MAD+K  +DL+TAIL+RKDRPNRLIVEEA +DDNSVV+LSQAKM++LQLFRGDTV+LKGK
Sbjct: 1   MADSKG-EDLATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGK 59

Query: 329 RRKETVCIVLS 361
           RRKETVCIVLS
Sbjct: 60  RRKETVCIVLS 70



 Score = 34.7 bits (76), Expect = 0.24
 Identities = 18/32 (56%), Positives = 19/32 (59%)
 Frame = +3

Query: 363 DDNCPDEXIRMKRVVXNXLRCASFLMWVSIXS 458
           DD CPDE IRM RVV N L C      VS+ S
Sbjct: 71  DDTCPDEKIRMNRVVRNNL-CVHLSDVVSVQS 101


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,269,350
Number of Sequences: 53049
Number of extensions: 430350
Number of successful extensions: 873
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 24,988,368
effective HSP length: 86
effective length of database: 20,426,154
effective search space used: 5964436968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)