Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O12
         (1138 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...    94   1e-19
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...    93   3e-19
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...    93   3e-19

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 44/72 (61%), Positives = 59/72 (81%)
 Frame = +2

Query: 161 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 340
           K  D+LSTAIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72

Query: 341 TVCIVLSGR*LP 376
           +V I++S    P
Sbjct: 73  SVAIIVSDESCP 84



 Score = 31.9 bits (69), Expect = 0.86
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 363 DDNCPDEXIRMKRVVXNXLR 422
           D++CP+E +RM RVV N LR
Sbjct: 80  DESCPNEKVRMNRVVRNNLR 99


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 93.5 bits (222), Expect = 3e-19
 Identities = 43/67 (64%), Positives = 59/67 (88%)
 Frame = +2

Query: 161 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 340
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 341 TVCIVLS 361
           TV IVL+
Sbjct: 73  TVSIVLN 79


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score = 93.5 bits (222), Expect = 3e-19
 Identities = 43/67 (64%), Positives = 59/67 (88%)
 Frame = +2

Query: 161 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 340
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 341 TVCIVLS 361
           TV IVL+
Sbjct: 73  TVSIVLN 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,814,807
Number of Sequences: 27780
Number of extensions: 222973
Number of successful extensions: 457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3078165110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)