Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O11
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    77   3e-15
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    29   1.2  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    28   2.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   6.2  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    26   8.2  

>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 77.4 bits (182), Expect = 3e-15
 Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 5/188 (2%)
 Frame = +1

Query: 256 NPNQRYIIEDPKMLTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYPSPGKPLDV 435
           NP   Y +     ++ VL  +  F N+HL     N +AV+  H  K EYLYPS      V
Sbjct: 33  NPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSDKVEYLYPSIAPEQKV 92

Query: 436 RQID-----GQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXXCFIARSRR 600
            ++D       Y  F  V+  +   +  L+ S  +  +  ++           +I + + 
Sbjct: 93  AEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSR--KTMISGALSRALAYINQVQN 150

Query: 601 SAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSXDKXLSLLQXGXDI 780
                LR  SRIL+ + + D A QYI  MN  F AQK+ + I+VC+ +     L+   D 
Sbjct: 151 KNT--LR--SRILIFSLTGDVALQYIPTMNCIFCAQKKNIPINVCNIEGGTLFLEQAADA 206

Query: 781 TGGLYLXI 804
           TGG+YL +
Sbjct: 207 TGGIYLKV 214


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +1

Query: 610 PGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSXDKXLSLLQXGXDITGG 789
           P     +R   VT S D A      +N +    KE  LID+    + +S L+   D+   
Sbjct: 229 PAPEEETRKADVTNSLDPANVLSTELNTWHVMPKEAWLIDISMSSQPISSLKEHPDLKPT 288

Query: 790 LYL 798
           LY+
Sbjct: 289 LYI 291


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 289 KMLTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLY 408
           K++T +L A V  S   L++K    L  IG H+H+ +Y Y
Sbjct: 218 KVITKILGAAVVTSIVLLLEKIF--LHFIGFHYHEVQYQY 255


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -2

Query: 377 PITASSLLAFCIKWELLNATTASKTFVSILGSSIMYL*LG---LVSTITTRRLLSEGTSS 207
           PI +SS L       L N T +S +  ++  SS +   +    L++  ++  LLS  TSS
Sbjct: 698 PIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSS 757

Query: 206 SAIAN 192
           SAI +
Sbjct: 758 SAIVS 762


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -1

Query: 852 FRQDTHSKYCSSP--PXRYXQVQAARDVXTXLQQTQXFVXRAHVDQDLLLLCGEEHVHVV 679
           F +D   ++C     P ++      RD+   L++T   +       + L++CG+ H    
Sbjct: 165 FVEDMKERFCQGKKLPLKFAY-SILRDLKELLEKTPSLIDIPVKGDETLVICGDTHGQYF 223

Query: 678 DVL 670
           D+L
Sbjct: 224 DLL 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,627
Number of Sequences: 5004
Number of extensions: 64813
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)