Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O11
         (882 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30093-1|CAA82909.1|  303|Homo sapiens basic transcription facto...   120   5e-27
BC065250-1|AAH65250.1|  308|Homo sapiens general transcription f...   120   5e-27
BC047868-1|AAH47868.2|  303|Homo sapiens GTF2H3 protein protein.      120   5e-27
BC039726-1|AAH39726.1|  303|Homo sapiens GTF2H3 protein protein.      120   5e-27
AF548661-1|AAN40702.1|  308|Homo sapiens general transcription f...   120   5e-27
BC031030-1|AAH31030.1|  235|Homo sapiens Unknown (protein for IM...    93   2e-18

>Z30093-1|CAA82909.1|  303|Homo sapiens basic transcription factor
           2, 35 kD subunit protein.
          Length = 303

 Score =  120 bits (290), Expect = 5e-27
 Identities = 68/185 (36%), Positives = 93/185 (50%), Gaps = 14/185 (7%)
 Frame = +1

Query: 295 LTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYPS-----------PGKPLDVRQ 441
           L+  +DAV+   NSHL    SN+LAVI  H  +S +LYP            PG P +   
Sbjct: 34  LSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNP 93

Query: 442 I---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXXCFIARSRRSAIP 612
               DG+YEL T   + I   + +L+     + +  E+          C+I R  +    
Sbjct: 94  SGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKD 153

Query: 613 GLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSXDKXLSLLQXGXDITGGL 792
                SRILV+  + D+A QY+N+MNV F AQK+ +LID C  D    LLQ   DITGGL
Sbjct: 154 NQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGL 213

Query: 793 YLXIP 807
           YL +P
Sbjct: 214 YLKVP 218


>BC065250-1|AAH65250.1|  308|Homo sapiens general transcription
           factor IIH, polypeptide 3, 34kDa protein.
          Length = 308

 Score =  120 bits (290), Expect = 5e-27
 Identities = 68/185 (36%), Positives = 93/185 (50%), Gaps = 14/185 (7%)
 Frame = +1

Query: 295 LTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYPS-----------PGKPLDVRQ 441
           L+  +DAV+   NSHL    SN+LAVI  H  +S +LYP            PG P +   
Sbjct: 34  LSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNP 93

Query: 442 I---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXXCFIARSRRSAIP 612
               DG+YEL T   + I   + +L+     + +  E+          C+I R  +    
Sbjct: 94  SGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKD 153

Query: 613 GLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSXDKXLSLLQXGXDITGGL 792
                SRILV+  + D+A QY+N+MNV F AQK+ +LID C  D    LLQ   DITGGL
Sbjct: 154 NQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGL 213

Query: 793 YLXIP 807
           YL +P
Sbjct: 214 YLKVP 218


>BC047868-1|AAH47868.2|  303|Homo sapiens GTF2H3 protein protein.
          Length = 303

 Score =  120 bits (290), Expect = 5e-27
 Identities = 68/185 (36%), Positives = 93/185 (50%), Gaps = 14/185 (7%)
 Frame = +1

Query: 295 LTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYPS-----------PGKPLDVRQ 441
           L+  +DAV+   NSHL    SN+LAVI  H  +S +LYP            PG P +   
Sbjct: 29  LSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNP 88

Query: 442 I---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXXCFIARSRRSAIP 612
               DG+YEL T   + I   + +L+     + +  E+          C+I R  +    
Sbjct: 89  SGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKD 148

Query: 613 GLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSXDKXLSLLQXGXDITGGL 792
                SRILV+  + D+A QY+N+MNV F AQK+ +LID C  D    LLQ   DITGGL
Sbjct: 149 NQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGL 208

Query: 793 YLXIP 807
           YL +P
Sbjct: 209 YLKVP 213


>BC039726-1|AAH39726.1|  303|Homo sapiens GTF2H3 protein protein.
          Length = 303

 Score =  120 bits (290), Expect = 5e-27
 Identities = 68/185 (36%), Positives = 93/185 (50%), Gaps = 14/185 (7%)
 Frame = +1

Query: 295 LTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYPS-----------PGKPLDVRQ 441
           L+  +DAV+   NSHL    SN+LAVI  H  +S +LYP            PG P +   
Sbjct: 29  LSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNP 88

Query: 442 I---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXXCFIARSRRSAIP 612
               DG+YEL T   + I   + +L+     + +  E+          C+I R  +    
Sbjct: 89  SGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKD 148

Query: 613 GLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSXDKXLSLLQXGXDITGGL 792
                SRILV+  + D+A QY+N+MNV F AQK+ +LID C  D    LLQ   DITGGL
Sbjct: 149 NQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGL 208

Query: 793 YLXIP 807
           YL +P
Sbjct: 209 YLKVP 213


>AF548661-1|AAN40702.1|  308|Homo sapiens general transcription
           factor IIH, polypeptide 3, 34kDa protein.
          Length = 308

 Score =  120 bits (290), Expect = 5e-27
 Identities = 68/185 (36%), Positives = 93/185 (50%), Gaps = 14/185 (7%)
 Frame = +1

Query: 295 LTNVLDAVVAFSNSHLMQKASNELAVIGCHFHKSEYLYPS-----------PGKPLDVRQ 441
           L+  +DAV+   NSHL    SN+LAVI  H  +S +LYP            PG P +   
Sbjct: 34  LSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNP 93

Query: 442 I---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXXCFIARSRRSAIP 612
               DG+YEL T   + I   + +L+     + +  E+          C+I R  +    
Sbjct: 94  SGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKD 153

Query: 613 GLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSXDKXLSLLQXGXDITGGL 792
                SRILV+  + D+A QY+N+MNV F AQK+ +LID C  D    LLQ   DITGGL
Sbjct: 154 NQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGL 213

Query: 793 YLXIP 807
           YL +P
Sbjct: 214 YLKVP 218


>BC031030-1|AAH31030.1|  235|Homo sapiens Unknown (protein for
           IMAGE:4724313) protein.
          Length = 235

 Score = 92.7 bits (220), Expect = 2e-18
 Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
 Frame = +1

Query: 406 YPSPGKPLDVRQI---DGQYELFTLVEKTIKMRLVNLIKSQPQEEKPGESXXXXXXXXXX 576
           +  PG P +       DG+YEL T   + I   + +L+     + +  E+          
Sbjct: 9   FGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKAL 68

Query: 577 CFIARSRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCSXDKXLS 756
           C+I R  +         SRILV+  + D+A QY+N+MNV F AQK+ +LID C  D    
Sbjct: 69  CYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSG 128

Query: 757 LLQXGXDITGGLYLXIP 807
           LLQ   DITGGLYL +P
Sbjct: 129 LLQQACDITGGLYLKVP 145


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,078,468
Number of Sequences: 237096
Number of extensions: 2543937
Number of successful extensions: 4404
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4398
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)