Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O11
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47357-4|CAA87423.1|  345|Caenorhabditis elegans Hypothetical pr...    41   0.001
Z92781-1|CAB07180.2|  250|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>Z47357-4|CAA87423.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK1128.4 protein.
          Length = 345

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
 Frame = +1

Query: 592 SRRSAIPGLRTSSRILVVTGSADTAAQYINYMNVFFTAQKEQVLIDVCS--XDKXLSLLQ 765
           S +S     + ++R +V++ +    +++ + MN+FF+A K+ + +DV S   D    +LQ
Sbjct: 184 SEQSETASEKATNRAVVISITPIMGSEHGSLMNLFFSAAKQSICVDVVSMGDDFTGGILQ 243

Query: 766 XGXDITGGLYL 798
              DITGG +L
Sbjct: 244 QAADITGGSFL 254



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 304 VLDAVVAFSNSHLMQKASNELAV 372
           +L A+V+F N+HL Q A+N+L V
Sbjct: 79  ILRAIVSFCNAHLGQSANNQLLV 101


>Z92781-1|CAB07180.2|  250|Caenorhabditis elegans Hypothetical
           protein F09C3.2 protein.
          Length = 250

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 583 IARSRRSAIPGLRTSSRILVVTGSADTAAQYINY 684
           IA  +   I GLR S  ++   G+ DT AQY +Y
Sbjct: 194 IADLKMGKIAGLRASVAVMTGVGTRDTLAQYSDY 227


>Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical
           protein F46B3.1 protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 283 PLLCIFDWDWCPLLPRGDCCQRAHR-RLPL 197
           P +C+  WD CPL    + C R H+ + PL
Sbjct: 90  PAICVDQWDNCPLYKLINQCTRYHKTKCPL 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,864,629
Number of Sequences: 27780
Number of extensions: 379167
Number of successful extensions: 883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)