Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_O10
(879 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical ... 33 0.27
AC006603-4|AAF39747.2| 379|Caenorhabditis elegans Hypothetical ... 31 1.4
AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like nucl... 30 1.9
AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical ... 30 1.9
Z78410-3|CAB01641.1| 555|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z68116-11|CAA92176.1| 317|Caenorhabditis elegans Hypothetical p... 30 2.5
Z68114-12|CAA92163.1| 317|Caenorhabditis elegans Hypothetical p... 30 2.5
Z81062-6|CAB02949.2| 320|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF068709-5|AAC19250.2| 332|Caenorhabditis elegans Serpentine re... 29 3.3
AL110487-4|CAB54427.1| 505|Caenorhabditis elegans Hypothetical ... 29 4.4
Z81117-2|CAB03314.2| 343|Caenorhabditis elegans Hypothetical pr... 28 7.7
>AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical
protein F27E11.2b protein.
Length = 454
Score = 33.1 bits (72), Expect = 0.27
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Frame = +1
Query: 214 IGTRPISSNGLWCCALL---PALLISYNFLYKVSPLYTLVAYVAVGLFCYS-ILFVVFIS 381
IGT P+ S W C L A L+ ++ K++ + A V G C + +F +++
Sbjct: 276 IGTTPVESVNAWACTFLGMSEAPLMVAPYIEKLTD-SEIFAIVTSGFACVAGTVFTAYVA 334
Query: 382 VSCLVLREPIYGGCIASSLVSALMNFIFNTQGL 480
+ PIY + +SL+SA M+ +N G+
Sbjct: 335 LGAC----PIY--LLTASLLSAPMSLAYNNLGI 361
>AC006603-4|AAF39747.2| 379|Caenorhabditis elegans Hypothetical
protein B0524.2 protein.
Length = 379
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +1
Query: 337 VGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLT 507
+G + + ++F L+ R Y GC + SLV+A+ FIFN + L +SF T
Sbjct: 105 LGSYQFGAAKMIFDHGKKLMKRVERYSGCSSGSLVAAM--FIFNPEKLVFLVSFRKT 159
>AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like
nucleoside transporter protein.
Length = 575
Score = 30.3 bits (65), Expect = 1.9
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Frame = +1
Query: 214 IGTRPISSNGLWCCALL---PALLISYNFLYKVSPLYTLVAYVAVGLFCYS-ILFVVFIS 381
IGT P+ S W C L A L+ ++ K++ + A V G C + +F +++
Sbjct: 296 IGTTPVESVNAWACTFLGMSEAPLMVAPYIEKLTD-SEIFAIVTSGFACVAGTVFTAYVA 354
Query: 382 VSCLVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLTAVYLYSTMLRWSLTKFPK 561
+ PIY + +SL+SA M+ + + F + T+ + P
Sbjct: 355 LGAC----PIY--LLTASLLSAPMSL------ACSKIMFP----EFFDTLCSAGVALVPT 398
Query: 562 TYTIGEAMIVTQGLTLFTIAVI 627
+ IG ++V L F AV+
Sbjct: 399 VFAIGATLVVIMSLLAFLDAVM 420
>AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical
protein F27E11.2a protein.
Length = 555
Score = 30.3 bits (65), Expect = 1.9
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Frame = +1
Query: 214 IGTRPISSNGLWCCALL---PALLISYNFLYKVSPLYTLVAYVAVGLFCYS-ILFVVFIS 381
IGT P+ S W C L A L+ ++ K++ + A V G C + +F +++
Sbjct: 276 IGTTPVESVNAWACTFLGMSEAPLMVAPYIEKLTD-SEIFAIVTSGFACVAGTVFTAYVA 334
Query: 382 VSCLVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLTAVYLYSTMLRWSLTKFPK 561
+ PIY + +SL+SA M+ + + F + T+ + P
Sbjct: 335 LGAC----PIY--LLTASLLSAPMSL------ACSKIMFP----EFFDTLCSAGVALVPT 378
Query: 562 TYTIGEAMIVTQGLTLFTIAVI 627
+ IG ++V L F AV+
Sbjct: 379 VFAIGATLVVIMSLLAFLDAVM 400
>Z78410-3|CAB01641.1| 555|Caenorhabditis elegans Hypothetical
protein C51E3.6 protein.
Length = 555
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/81 (22%), Positives = 39/81 (48%)
Frame = +1
Query: 331 VAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLTA 510
V G+F + + I + +P+ GG +ASS+ + + N Q + +LS ++
Sbjct: 378 VMAGVFLIILGLITKIGALLSTIPDPLVGGVLASSMAMVVGVAVSNLQTVDMTLSRNM-G 436
Query: 511 VYLYSTMLRWSLTKFPKTYTI 573
++ +S M + K+ K + +
Sbjct: 437 IFGFSMMFGLIVPKYFKLFPV 457
>Z68116-11|CAA92176.1| 317|Caenorhabditis elegans Hypothetical
protein F17A2.8 protein.
Length = 317
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 367 VVFISVSCLVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLTAVYL 519
VV + ++CL+LR I ASS N +F QGLT + F T VY+
Sbjct: 195 VVIVPITCLLLRRKILKLLTASSDALYFQNRVF-LQGLTLQI-FGHTLVYV 243
>Z68114-12|CAA92163.1| 317|Caenorhabditis elegans Hypothetical
protein F17A2.8 protein.
Length = 317
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +1
Query: 367 VVFISVSCLVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLTAVYL 519
VV + ++CL+LR I ASS N +F QGLT + F T VY+
Sbjct: 195 VVIVPITCLLLRRKILKLLTASSDALYFQNRVF-LQGLTLQI-FGHTLVYV 243
>Z81062-6|CAB02949.2| 320|Caenorhabditis elegans Hypothetical
protein F15A4.7 protein.
Length = 320
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 280 SYNFLYKVSPLYTLVAYVAVGLFCY-SILFVVFIS 381
+Y+ L++ + + Y++VGLFC+ S+L ++ IS
Sbjct: 17 NYDILFENAIYFVTACYLSVGLFCHISLLKIILIS 51
>AF068709-5|AAC19250.2| 332|Caenorhabditis elegans Serpentine
receptor, class t protein29 protein.
Length = 332
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 241 GLWCCALLPALLISYNFLYKVSPLYTLVAYVAVGLFCYSIL-FVVFISVSCLVLREPI 411
GLWCC+ + A+++ N L +S TL + G Y ++ F + + +V PI
Sbjct: 117 GLWCCSCIIAMILVMNRLLDLSK-STLSTLIFEGNRTYLVMSFTILYGLYFVVFTPPI 173
>AL110487-4|CAB54427.1| 505|Caenorhabditis elegans Hypothetical
protein Y39E4B.5 protein.
Length = 505
Score = 29.1 bits (62), Expect = 4.4
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = +1
Query: 61 FGLVVNTVKICSQKRMQXXSKVLHFYNSFKRYTSLCMSVXYTISRNLRDGGIG--TRPIS 234
FG++ N + + + V+ Y S+ +Y L + Y IS + G + P
Sbjct: 335 FGILSNVLLVAFSFFSHLSATVVSPY-SWPKYACLASLLAYCISFGMVLGPLSWFVAPEL 393
Query: 235 SNGLWCCALLPALLISYNFLYKVSPLYTLVAYVAVGLFCYSILFVV 372
+ C + A +N L ++ T+ + G C+ LFVV
Sbjct: 394 VSQRHRCTIFSACFAIHNLLIALTDFATIPLFRIFGSMCFVFLFVV 439
>Z81117-2|CAB03314.2| 343|Caenorhabditis elegans Hypothetical
protein T06E6.4 protein.
Length = 343
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/111 (18%), Positives = 45/111 (40%)
Frame = +1
Query: 295 YKVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALMNFIFNTQ 474
Y+V+P A A+G S + +++ V +V+ + + G + L I
Sbjct: 186 YQVNPWIVRTACAAIGFLMISTCYGIWLGVHTMVILQRLRGHMSVQTYQMHLTALISLGL 245
Query: 475 GLTTSLSFSLTAVYLYSTMLRWSLTKFPKTYTIGEAMIVTQGLTLFTIAVI 627
+ T F L VY++ ++ + + ++ T + L T+ ++
Sbjct: 246 QMATPTVFIL-PVYMFVAVIVTDAVDMQRIVSWAPCLMSTHSMLLVTVMIM 295
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,152,063
Number of Sequences: 27780
Number of extensions: 265059
Number of successful extensions: 754
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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