Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O10
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    25   0.70 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    25   0.70 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   8.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   8.6  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +1

Query: 298 KVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALMNFIFNTQG 477
           +++ L   +   AVG+F    + + +I +   +LR    GGC   S  S+     F + G
Sbjct: 73  RLNKLAVFIVAGAVGVFSSPTILISYIYILMAILRMSADGGCRNFSTCSSHPTAAFISYG 132


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +1

Query: 298 KVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALMNFIFNTQG 477
           +++ L   +   AVG+F    + + +I +   +LR    GGC   S  S+     F + G
Sbjct: 72  RLNKLAVFIVAGAVGVFSVLTILISYIYILMAILRMSADGGCRNFSTCSSHPTAAFISYG 131


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 6/29 (20%), Positives = 18/29 (62%)
 Frame = +1

Query: 292 LYKVSPLYTLVAYVAVGLFCYSILFVVFI 378
           ++K++P++  + Y    L C++ ++ + I
Sbjct: 90  VFKIAPIFKGIGYATCVLSCWTNIYYIII 118


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 6/29 (20%), Positives = 18/29 (62%)
 Frame = +1

Query: 292 LYKVSPLYTLVAYVAVGLFCYSILFVVFI 378
           ++K++P++  + Y    L C++ ++ + I
Sbjct: 143 VFKIAPIFKGIGYATCVLSCWTNIYYIII 171


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 162 TVHVGXLYNFKKSKRWRYRNEAYLKQRVMVLCFTARIINLIQ 287
           T+H    Y +  + ++ Y N  Y K+    L +   IIN+ Q
Sbjct: 89  TIHNNNNYKYNYNNKYNYNNNNYNKK----LYYKNYIINIEQ 126


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 180 LYNFKKSKRWRYRNEAY 230
           +Y+F+ S+ WR  N  +
Sbjct: 210 VYDFRNSRSWRITNNLF 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,188
Number of Sequences: 438
Number of extensions: 3419
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)