Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O08
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   2.5  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.3  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   3.3  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   4.4  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    27   4.4  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   5.8  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   5.8  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   7.7  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 19/104 (18%)
 Frame = +1

Query: 271 ANSCNNRASLYXRIKXLLVSYE-----WSDCNFCVSGKKFKAHKLILGISSPVFEAMLY- 432
           A S N    L+     +L SYE     +SD         F +HK IL   S     +L  
Sbjct: 591 AASSNEMQLLFEGSIPILTSYENYKQSFSDVTIYCGTSMFHSHKFILCARSSFLRKLLLQ 650

Query: 433 ---GPLSN----------NNDIHIPDIEPEIFQLILNYIYTDNV 525
                +SN          ++ I + DI P    ++L+Y+YTD +
Sbjct: 651 KKKSSVSNIIYIEEITQSHSTIRVEDIPPLAVAILLHYLYTDTL 694


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 352 FCVSGKKFKAHKLILGISSPVFEAMLYGPLS-NNNDIHIPD--IEPEIFQLILNYIYTDN 522
           F  SG  F   K+  GI  P+FE +  G     NN ++I    +EP+     L Y+++D 
Sbjct: 306 FLFSGTVFMRVKV--GI--PLFERLKVGTNKVKNNSVNIAQSFLEPQTRSTFLRYLFSDE 361

Query: 523 VDI 531
           V +
Sbjct: 362 VSV 364


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +1

Query: 481 EIFQLILNYIYTDNVDITSIEQAFDLLYASRKYLLEHLTKTCIEYIKENVTIDN 642
           +IFQ  LN+I T N ++ S+    D     + Y+L+   +   + +KEN T+ N
Sbjct: 59  DIFQDFLNFIITKNQEMFSM----DCNSICKSYVLKVAEEKIEKLLKENGTLKN 108


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -1

Query: 383 CALNFFPETQKLQSLHS*DTNSXLMRXYKLARLLHEFAFFKXPSLNLM 240
           C + +FP+     S HS D  +   R Y L R L    ++   S  L+
Sbjct: 21  CFVKYFPKCSVQSSFHSYDELAFSRRLYNLPRTLLNSRYYSNHSHGLV 68


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 983

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 3/110 (2%)
 Frame = +1

Query: 487  FQLILNYIYTDNVDITSIEQAFDLLYASRKYLLEHLTKTCIEYIKENVTIDNVIEVLNYP 666
            +QL+ N +   +   T  E+  DLL   +   L+ L KT    I E   +D + E L   
Sbjct: 731  YQLLDNTVLMKDYSFTIFEKLNDLLDDVKNETLQALCKTVCLLI-ETTPMDMIYESLLNS 789

Query: 667  DYMHDKQLTTYAVNXXCAHA---YYLFQRHIQVISPLCLXMVLQSDEINI 807
              +  + L + A N         Y L    I +  P  +  V Q+  INI
Sbjct: 790  SLL-SRLLLSIATNDKHPQVLIEYLLVVSRISLREPELILKVCQTKNINI 838


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 505  YIYTDNVDITSIEQAFDLLYASRKY 579
            Y+   +VD+T I   ++LLY S  Y
Sbjct: 1449 YLQRQHVDVTDIPMYYELLYPSTDY 1473


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +1

Query: 559 LYASRKYLLEHLTKTCIEYIKENVTIDNVIEVLNYPDYMHDKQLTTYAVN 708
           ++  +KY +    K+C + IK+++    V + L  P+++  K  T +A +
Sbjct: 579 MFGRKKYFVRIDIKSCYDRIKQDLMFRIVKKKLKDPEFVIRKYATIHATS 628


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +1

Query: 463  IPDIEPEIFQLILNYIYTDNVDITSIEQAFDLLYASRKYLLEHLTKTCIEYIKENV 630
            +PD+       +L+ + T++  +T+    +   YA ++YL E+ T T   YIK ++
Sbjct: 1032 MPDVNYWYADTMLHAVNTEDF-VTTDGDIWSATYAIKRYLGENPTDTFAYYIKASL 1086


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,077
Number of Sequences: 5004
Number of extensions: 55824
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)