Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O08
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      35   8e-04
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   8.1  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 35.1 bits (77), Expect = 8e-04
 Identities = 18/83 (21%), Positives = 37/83 (44%)
 Frame = +1

Query: 283 NNRASLYXRIKXLLVSYEWSDCNFCVSGKKFKAHKLILGISSPVFEAMLYGPLSNNNDIH 462
           N ++S+    + L    ++ D      G+  KAH+++L   SP F  +L      +  I 
Sbjct: 13  NYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKSTPCKHPVIV 72

Query: 463 IPDIEPEIFQLILNYIYTDNVDI 531
           + D+       ++ +IY   V++
Sbjct: 73  LQDVAFSDLHALVEFIYHGEVNV 95



 Score = 25.4 bits (53), Expect = 0.66
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 190 IXRHQILTSFVPLXSWIIKFKLGXLKNANSCNNRASLYXR 309
           + RH+    F PL S +        +  NS NN  S+Y R
Sbjct: 387 LKRHKEQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIYHR 426


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 532 LCLHCLYRYN*VLAEIFLVLYQGYEYHY 449
           L L  L RY     E+++ LYQ  E HY
Sbjct: 220 LRLSRLVRYVSQWEEVYIPLYQQPERHY 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,782
Number of Sequences: 438
Number of extensions: 3655
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)