Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O06
         (1192 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.7  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    27   3.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   6.8  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   9.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = +3

Query: 825  PSXXPSPPXPTPXXXPPXPRRTSAXLGXPXXXHTPXQSXP 944
            P    +PP P P   PP P+ +S     P     P    P
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIP 1074


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 962  WXRXXPDXSXLPPEXFGW 1015
            W    PD +  PPE FGW
Sbjct: 155  WLDLGPDWNITPPEGFGW 172


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 29/111 (26%), Positives = 32/111 (28%), Gaps = 6/111 (5%)
 Frame = +1

Query: 544 PPRSXSXAPXSPPTGXXXXXXLXXPRXXPXXVXPXXSSVVXPXXAS-----XPAAPPXXW 708
           PP S S A  +PP           P   P       S+   P   S      P+ PP   
Sbjct: 377 PPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP 436

Query: 709 XXSPXGAXXIXACXHSXP-XPPLRPLXXDXSXSPXXAGXXHPXXXPLPCXP 858
              P GA        S P  PPL          P  A    P   P P  P
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 171 CEVKLVKFLLKIHNRMKARYLTFFSYIGTGFRSSEKIWLXENRNLPD 311
           C   LVK +   HN++    + F   +   F +SEK  + EN+ LP+
Sbjct: 455 CAEALVKVIPHYHNKL----IDFSQVLQLVFSASEKFPIQENQPLPE 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,070
Number of Sequences: 5004
Number of extensions: 30797
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 641482604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)