Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O06
         (1192 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical ...    31   1.6  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    30   2.8  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    30   2.8  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    29   4.9  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    29   4.9  
Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    29   6.5  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   6.5  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   6.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   6.5  

>AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical
           protein B0205.10 protein.
          Length = 455

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 22/77 (28%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
 Frame = +2

Query: 668 PXQXLXQPXXPXHGPXPPXAXXXSXPAITPXPXLXSVXCXETXRHXPXXPAXA----IPX 835
           P     QP  P   P  P       PA  P P    +         P  PA A     P 
Sbjct: 62  PASVQQQPEAPAPAPTAPDVQQPG-PAPVPVPEPAQLAPQSAPEPTPDAPAAAPVQETPQ 120

Query: 836 XXPSXAXPXPXPXAPAP 886
             P+   P P P  PAP
Sbjct: 121 VAPAPETPAPAPETPAP 137


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = +3

Query: 813 RRXXPSXXPSPPXPTPXXXPPXPRRTSAXLGXPXXXHTPXQSXPP 947
           R   P   P+ P P P   PP P   +   G      TP +S  P
Sbjct: 130 RTCCPPPTPAAPPPPPPPPPPAPEAPTQCCGSQPYGRTPCRSGCP 174


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
 Frame = +2

Query: 689 PXXPXHGPXPPXAXXXSXPAITPXPXL-XSVXCXETXRHXPXXPAXAIPXXXPSXAXPXP 865
           P  P + P PP       PA  P P         E     P  PA A     P    P P
Sbjct: 40  PCPPQYAPLPPPPMPAPAPAYNPYPCANPPCIVVEPMPVAPPAPAPAY-NPYPCATPPCP 98

Query: 866 XPXAPAP 886
            P  P P
Sbjct: 99  LPYIPEP 105


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 30/124 (24%), Positives = 35/124 (28%), Gaps = 1/124 (0%)
 Frame = +2

Query: 518 PSXXSXXPTXPGXX-LXLPXRPPPXXXHXTXXXXPALXXXXXXLGXRRWSXPXQXLXQPX 694
           PS  S  P   G      P  PPP     +    PA           R   P + L  P 
Sbjct: 537 PSFPSSAPIGSGASSYSTPAAPPPPTRVESHGLAPARPPPPPPSSGTRGIAPSRPL--PQ 594

Query: 695 XPXHGPXPPXAXXXSXPAITPXPXLXSVXCXETXRHXPXXPAXAIPXXXPSXAXPXPXPX 874
            P +G   P     + P   P P   S          P  P    P   P+     P P 
Sbjct: 595 APNYGT--PENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPP 652

Query: 875 APAP 886
            P P
Sbjct: 653 PPPP 656


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 30/124 (24%), Positives = 35/124 (28%), Gaps = 1/124 (0%)
 Frame = +2

Query: 518 PSXXSXXPTXPGXX-LXLPXRPPPXXXHXTXXXXPALXXXXXXLGXRRWSXPXQXLXQPX 694
           PS  S  P   G      P  PPP     +    PA           R   P + L  P 
Sbjct: 363 PSFPSSAPIGSGASSYSTPAAPPPPTRVESHGLAPARPPPPPPSSGTRGIAPSRPL--PQ 420

Query: 695 XPXHGPXPPXAXXXSXPAITPXPXLXSVXCXETXRHXPXXPAXAIPXXXPSXAXPXPXPX 874
            P +G   P     + P   P P   S          P  P    P   P+     P P 
Sbjct: 421 APNYGT--PENRPHAVPPPPPPPPPQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPP 478

Query: 875 APAP 886
            P P
Sbjct: 479 PPPP 482


>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = +2

Query: 749 ITPXPXLXSVXCXETXRHXPXXPAXAIPXXXPSXAXPXPXPXAPAP 886
           +TP P + +    E     P  P    P    + A P P   AP P
Sbjct: 156 VTPEPTVKNTTAAEPTTEAPPPPTTKAPPPPTTKAPPPPTTKAPPP 201


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +3

Query: 825 PSXXPSPPXPTPXXXPPXPRRTSAXLGXPXXXHTPXQSXPP 947
           P    SPP P     PP PR  S     P     P  S PP
Sbjct: 274 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 314


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +3

Query: 825 PSXXPSPPXPTPXXXPPXPRRTSAXLGXPXXXHTPXQSXPP 947
           P    SPP P     PP PR  S     P     P  S PP
Sbjct: 295 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 335


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +3

Query: 825 PSXXPSPPXPTPXXXPPXPRRTSAXLGXPXXXHTPXQSXPP 947
           P    SPP P     PP PR  S     P     P  S PP
Sbjct: 280 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,908,206
Number of Sequences: 27780
Number of extensions: 203080
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3265985354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)