Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O06
         (1192 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   9.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 14/43 (32%), Positives = 16/43 (37%)
 Frame = +3

Query: 825 PSXXPSPPXPTPXXXPPXPRRTSAXLGXPXXXHTPXQSXPPXA 953
           PS     P P+P   P  P+R S     P     P    PP A
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGS----PPNPSQGPPPGGPPGA 54


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 249 IGTGFRSSEKIWLXENRN 302
           +  GF SS   WL  N N
Sbjct: 426 VSAGFSSSSNTWLRVNEN 443


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 249 IGTGFRSSEKIWLXENRN 302
           +  GF SS   WL  N N
Sbjct: 426 VSAGFSSSSNTWLRVNEN 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,233
Number of Sequences: 438
Number of extensions: 3181
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40608837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)