Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_O01
         (1187 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0874 + 12017069-12018051,12018137-12018316,12018421-120186...    29   5.4  
05_06_0078 - 25412770-25413852                                         29   9.5  

>03_02_0874 + 12017069-12018051,12018137-12018316,12018421-12018600,
            12018718-12018797,12018999-12019259,12019360-12019474,
            12019631-12019855,12020840-12020849
          Length = 677

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 979  PPTPXXXXRPSLPCXHAXXLXRXRAAXRCSLPARXPLSAVS 1101
            PP P     P++P  H+  L   + + R   P+  PLSA S
Sbjct: 66   PPPPPSSSSPTVPAAHSPFLLSRQNSGRGPAPSPSPLSASS 106


>05_06_0078 - 25412770-25413852
          Length = 360

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -1

Query: 509 TGVAGGXXXPGRGXVPGAGXXGGD 438
           TG  GG    GRG   GAG  GGD
Sbjct: 266 TGGGGGGDGVGRGATGGAGGGGGD 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,925,231
Number of Sequences: 37544
Number of extensions: 173387
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3619931772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)