Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_N22
(1035 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 36 0.012
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 35 0.022
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.087
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.20
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 29 0.81
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 28 2.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.3
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 27 4.3
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 5.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 10.0
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 35.5 bits (78), Expect = 0.012
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 273 PWCWYCNREFDDEKILIQHQKAKHFTCHIC 362
P C +CN F D+ L +H + KH C+IC
Sbjct: 245 PKCEFCNTHFYDDDELFKHCREKHERCYIC 274
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 34.7 bits (76), Expect = 0.022
Identities = 38/142 (26%), Positives = 44/142 (30%), Gaps = 2/142 (1%)
Frame = +1
Query: 616 SYXPPLCXXXXXPLPXXVSTXGXYXAPPPTXG-QXPXPXTXFPWXXFSPXDLPTSXPPXS 792
S PP+ P P S+ G APPP P P P P+ PP
Sbjct: 1038 STAPPVPIPTSTP-PVPKSSSGAPSAPPPVPAPSSEIPSIPAP-SGAPPVPAPSGIPPVP 1095
Query: 793 XXXXPXXMXPXARLFRXXXFPAXPDXAXPXAXXTXX-PPXPPAXRXAPXPXXSPAGXPTH 969
P + PA P A P + PP P P P S A P
Sbjct: 1096 KPSVAAPPVPKPSV-AVPPVPA-PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP 1153
Query: 970 AXSXQXPXLPPSXXXPXXXTPA 1035
A S P PS P P+
Sbjct: 1154 APSGAPPVPKPSVAAPPVPAPS 1175
Score = 33.1 bits (72), Expect = 0.066
Identities = 30/116 (25%), Positives = 36/116 (31%), Gaps = 1/116 (0%)
Frame = +1
Query: 691 APPPTXGQXPXPXTXFPWXXFSPXDLPTSXPPXSXXXXPXXMXPXARLFRXXXFPAXPDX 870
A PP P P P +P+ PP P P+
Sbjct: 1110 AVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169
Query: 871 AXPXAXXTXXPPXP-PAXRXAPXPXXSPAGXPTHAXSXQXPXLPPSXXXPXXXTPA 1035
P A + PP P PA P P S A P S P +PP P TP+
Sbjct: 1170 PVP-APSSGIPPVPKPAAGVPPVPPPSEA-PPVPKPSVGVPPVPPPSTAPPVPTPS 1223
Score = 29.9 bits (64), Expect = 0.61
Identities = 21/89 (23%), Positives = 26/89 (29%), Gaps = 1/89 (1%)
Frame = +2
Query: 770 PLXXPPXPXPXPPXKXXPXPXYSXPXXSRP-XXIXPXPXXPXXXPLXFPXLXGXXXXPXX 946
P PP P P P P P +P + P P P+ P + P
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPS 1214
Query: 947 XXPXXPXTPXPXKXXXSLPRXXGPXXXXP 1033
P P TP +P P P
Sbjct: 1215 TAPPVP-TPSAGLPPVPVPTAKAPPVPAP 1242
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +1
Query: 901 PPXPPAXRXAPXPXXSPAGXPTHAXSXQXPXLPPSXXXPXXXTP 1032
PP PP P P S P S P PS P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.7 bits (71), Expect = 0.087
Identities = 23/85 (27%), Positives = 26/85 (30%)
Frame = +2
Query: 620 TSXPFAXGXPXPFRXXCPPXGXIXPPHPRXAXXPTQXXXFLGPXSXXXTFPLXXPPXPXP 799
TS P P P PP PP P P Q + + P PP P
Sbjct: 141 TSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPK 200
Query: 800 XPPXKXXPXPXYSXPXXSRPXXIXP 874
PP P + SRP P
Sbjct: 201 VPPPPLSQAPVAN--TSSRPSSFAP 223
Score = 27.9 bits (59), Expect = 2.5
Identities = 30/109 (27%), Positives = 34/109 (31%), Gaps = 2/109 (1%)
Frame = +1
Query: 697 PPTXGQXPXPXTXFPWXXFSPXDLPTSXPPXSXXXXPXXMXPXARLFRXXXFPAXPDXAX 876
PPT P T P P P S PP P P PA P +
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPP-----IPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 877 PXA--XXTXXPPXPPAXRXAPXPXXSPAGXPTHAXSXQXPXLPPSXXXP 1017
P A + PP PP P P S A + S PP+ P
Sbjct: 185 PSAPSLPSAVPPMPP---KVPPPPLSQA-PVANTSSRPSSFAPPAGHAP 229
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.20
Identities = 20/75 (26%), Positives = 22/75 (29%)
Frame = +1
Query: 781 PPXSXXXXPXXMXPXARLFRXXXFPAXPDXAXPXAXXTXXPPXPPAXRXAPXPXXSPAGX 960
PP P R P P A P PP A R + P +P
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSL 423
Query: 961 PTHAXSXQXPXLPPS 1005
P A P PPS
Sbjct: 424 PPSAPPSLPPSAPPS 438
Score = 31.1 bits (67), Expect = 0.27
Identities = 18/69 (26%), Positives = 21/69 (30%)
Frame = +1
Query: 757 PXDLPTSXPPXSXXXXPXXMXPXARLFRXXXFPAXPDXAXPXAXXTXXPPXPPAXRXAPX 936
P P S PP + P P + P P P PP AP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475
Query: 937 PXXSPAGXP 963
P +PA P
Sbjct: 476 PPPAPAPAP 484
Score = 27.9 bits (59), Expect = 2.5
Identities = 29/133 (21%), Positives = 35/133 (26%), Gaps = 5/133 (3%)
Frame = +1
Query: 652 PLPXXVSTXGXYXAPPP-TXGQXPXPXTXFPWXXFSPXDLPTSX----PPXSXXXXPXXM 816
P P + G PP P P P P L +S PP P
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399
Query: 817 XPXARLFRXXXFPAXPDXAXPXAXXTXXPPXPPAXRXAPXPXXSPAGXPTHAXSXQXPXL 996
P + P P + PP P P +PA P + P L
Sbjct: 400 APALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL 459
Query: 997 PPSXXXPXXXTPA 1035
P PA
Sbjct: 460 PAGMPAAPPLPPA 472
Score = 27.5 bits (58), Expect = 3.3
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +1
Query: 853 PAXPDXAXPXAXXTXXPPXPPAXRXAPXPXXSPAGXPTHAXSXQXPXLPPSXXXPXXXTP 1032
P+ P A P + P PP AP PAG P PP P P
Sbjct: 429 PSLPPSAPP-SLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 29.5 bits (63), Expect = 0.81
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 345 NASLSDVG*ESFRRQTPCYNTSTKVWMXSSSSY 247
N SL +V F++QTP YN + KV + SS +
Sbjct: 819 NYSLENVVLNIFKKQTPYYNQADKVHLWQSSRF 851
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 27.9 bits (59), Expect = 2.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 342 HFTCHICHKKLYTGPGLSIHCMQVHKXSH 428
+F C++C +YTG GL++ + + H
Sbjct: 380 YFACYLCSVGVYTGAGLNVTWLSANIAPH 408
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 3.3
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +1
Query: 853 PAXPDXAXPXAXXTXXPPXPPAXRXAPXPXXSPAGXPTHAXSXQXPXLPPS 1005
P P A P PP PP P P +P P S P LP S
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPM--SVPPPPSAPP-MPAGPPSAPPPPLPAS 1738
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.1 bits (57), Expect = 4.3
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +2
Query: 785 PXPXPXPPXKXXPXPXYSXPXXSRPXXIXP 874
P P P PP K P P P +R + P
Sbjct: 328 PVPTPAPPVKTSPHPASYRPQPTRNVEVRP 357
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Frame = +3
Query: 276 WCWY--CNREFDDEKILIQHQKA----KHFTCHICHKKLYTGPGLSIHCMQVH 416
+C Y C + F ++ L +H++ K F+C C++ L+ H Q+H
Sbjct: 27 YCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMH 79
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 10.0
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +1
Query: 901 PPXPPAXRXAPXPXXSPAGXPTHAXSXQXPXLPP 1002
PP PP P P +P P A P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,827
Number of Sequences: 5004
Number of extensions: 42625
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 541237406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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