Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_N22
         (1035 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    29   0.069
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.84 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   2.6  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   4.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.9  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 29.1 bits (62), Expect = 0.069
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
 Frame = +3

Query: 279 CWYCNREFDDEKILIQHQKAKH------FTCHICHKKLYTGPGLSIHCMQVHKXS 425
           C YC R F     L +H + KH      + C  C+++  T   L+ H    H+ S
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRGS 62


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.4 bits (53), Expect = 0.84
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +3

Query: 270 KPW-CWYCNREFDDEKILIQHQKA----KHFTCHICHKKLYTGPGLSIHCMQVHKXSHRX 434
           KP+ C  C + F   K L  H +     K +TC IC K      G + H +++H+ +H  
Sbjct: 202 KPYVCKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSF----GYN-HVLKLHQVAHYG 256

Query: 435 STQIHC 452
                C
Sbjct: 257 EKVYKC 262



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
 Frame = +3

Query: 258 KXASKPW-CWYCNREFDDEKILIQHQKA----KHFTCHICHKKLYTGPGLSIH 401
           K    P+ C  C + F     L +H +     K + C  C K       LS+H
Sbjct: 86  KEGEDPYRCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVH 138


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 12/42 (28%), Positives = 15/42 (35%)
 Frame = +3

Query: 327 HQKAKHFTCHICHKKLYTGPGLSIHCMQVHKXSHRXSTQIHC 452
           H   K F C  CHK+         H ++ H   H      HC
Sbjct: 4   HTGEKPFECPECHKRFTRD-----HHLKTHMRLHTGEKPYHC 40


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 339 KHFTCHICHKKLYTGPGLSIHCMQVH 416
           K FTC +C K L +   L  H    H
Sbjct: 4   KLFTCQLCGKVLCSKASLKRHVADKH 29


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 345 FTCHICHKKLYTGPGLSIHCMQVH 416
           +TC +C K L T   L  H  Q H
Sbjct: 372 YTCDVCGKTLSTKLTLKRHKEQQH 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,213
Number of Sequences: 438
Number of extensions: 4712
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34588554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)