Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_N21
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0651 - 12649275-12649373,12649418-12650479                       31   1.6  
02_02_0643 + 12590928-12592172,12592609-12592698                       31   1.6  
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334...    28   8.6  

>02_02_0651 - 12649275-12649373,12649418-12650479
          Length = 386

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 297 NSLNTFRGKSKSFLSNHTASDARPYYVCGTLISGQPNVIF 178
           N   TF    ++ + ++T   A PYY    ++SG+PN++F
Sbjct: 130 NPDTTFINHIQAVILSYTPCQAHPYYAAA-IVSGKPNIMF 168


>02_02_0643 + 12590928-12592172,12592609-12592698
          Length = 444

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 297 NSLNTFRGKSKSFLSNHTASDARPYYVCGTLISGQPNVIF 178
           N   TF    ++ + ++T   A PYY    ++SG+PN++F
Sbjct: 130 NPDTTFINHIQAVILSYTPCQAHPYYAAA-IVSGKPNIMF 168


>01_01_0450 -
           3344203-3344259,3344339-3344506,3344743-3344956,
           3345039-3345101,3345582-3345769,3345846-3346029,
           3346535-3346606,3346676-3346787,3346878-3346953,
           3347050-3347100,3347179-3347260,3347331-3347567,
           3347650-3347772,3348141-3348326,3348680-3349625,
           3350426-3350551,3350683-3350811,3350918-3351049,
           3351167-3351301,3351450-3351575,3352080-3352148,
           3352149-3352205,3352302-3352436,3352600-3352704,
           3352841-3352906,3353333-3353503,3353806-3353983
          Length = 1395

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +2

Query: 563 NGHSDAISASDDAIPRLKTPAISKESLKLAITDEEXEXRKXGPRKTMSLSNPLEIVKN 736
           NG+S  + A+ D  P  + P ISK S + +   E     K   R+    S PL  + N
Sbjct: 700 NGNSVRLHAARDFHPINEIPKISKPSSRCSFGTENASDTKDKARRLQMPSGPLIDITN 757


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,885,426
Number of Sequences: 37544
Number of extensions: 250918
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)