Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_N21
(887 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p... 29 3.4
AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical... 29 4.4
AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical... 29 4.4
AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical ... 29 4.4
AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical... 29 4.4
AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical... 29 4.4
AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical ... 29 4.4
Z72515-1|CAA96681.1| 419|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical pr... 28 7.8
AF016655-3|AAU05587.1| 322|Caenorhabditis elegans Serpentine re... 28 7.8
>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
protein F44D12.1 protein.
Length = 1034
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Frame = -3
Query: 303 TANSLNTFRG--KSKSFLSNHTASDARPYYV-----CGTLISGQPN 187
T + +++ RG +SF SN T SDARPY + T++ G+P+
Sbjct: 513 TMSQISSHRGGWDGRSFSSNTTTSDARPYSMHFTPTSSTIMEGKPH 558
>AL021488-11|CAN86609.1| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6c protein.
Length = 1245
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 227 PTTCAELSFRDNRMLFLEVFPLTLPAKDFQLFLVLSF 117
P CA+ +R + LF EVFP LP +F++ F
Sbjct: 857 PDPCAQSQYRLDYDLFSEVFPRLLPWPVTNIFIIRVF 893
>AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical
protein Y45F10A.6a protein.
Length = 1247
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 227 PTTCAELSFRDNRMLFLEVFPLTLPAKDFQLFLVLSF 117
P CA+ +R + LF EVFP LP +F++ F
Sbjct: 857 PDPCAQSQYRLDYDLFSEVFPRLLPWPVTNIFIIRVF 893
>AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6b protein.
Length = 1245
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 227 PTTCAELSFRDNRMLFLEVFPLTLPAKDFQLFLVLSF 117
P CA+ +R + LF EVFP LP +F++ F
Sbjct: 857 PDPCAQSQYRLDYDLFSEVFPRLLPWPVTNIFIIRVF 893
>AL021483-11|CAN86637.1| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6c protein.
Length = 1245
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 227 PTTCAELSFRDNRMLFLEVFPLTLPAKDFQLFLVLSF 117
P CA+ +R + LF EVFP LP +F++ F
Sbjct: 857 PDPCAQSQYRLDYDLFSEVFPRLLPWPVTNIFIIRVF 893
>AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical
protein Y45F10A.6a protein.
Length = 1247
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 227 PTTCAELSFRDNRMLFLEVFPLTLPAKDFQLFLVLSF 117
P CA+ +R + LF EVFP LP +F++ F
Sbjct: 857 PDPCAQSQYRLDYDLFSEVFPRLLPWPVTNIFIIRVF 893
>AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical
protein Y45F10A.6b protein.
Length = 1245
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 227 PTTCAELSFRDNRMLFLEVFPLTLPAKDFQLFLVLSF 117
P CA+ +R + LF EVFP LP +F++ F
Sbjct: 857 PDPCAQSQYRLDYDLFSEVFPRLLPWPVTNIFIIRVF 893
>Z72515-1|CAA96681.1| 419|Caenorhabditis elegans Hypothetical
protein T11A5.1 protein.
Length = 419
Score = 28.7 bits (61), Expect = 5.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 372 RLLDSRFRFAFKPHHFHGYT 313
+L+ + F F+FKP HFH ++
Sbjct: 383 KLISNLFEFSFKPSHFHEFS 402
>Z22181-5|CAA80183.1| 619|Caenorhabditis elegans Hypothetical
protein ZK632.6 protein.
Length = 619
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 572 SDAISASDDAIPRLKTPAISKESLKLAITDEEXEXRKXGPRKTMSLSNPLEIVKN 736
SDA SA DD +P L +E + I DEE + + GP + S P + +N
Sbjct: 515 SDAYSADDDRVPNLVDD--DEEEI---IGDEEDDVNQPGPSGSQSNPEPQDEEEN 564
>AF016655-3|AAU05587.1| 322|Caenorhabditis elegans Serpentine
receptor, class z protein67 protein.
Length = 322
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -1
Query: 185 LFLEVFPLTLPAKDFQLFLVLSFPTRTQGXIVL 87
LF +VF +++ A F+ FLV FPT T+ I+L
Sbjct: 106 LFNQVFRISIIALSFERFLVYFFPT-TEKNIIL 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,746,220
Number of Sequences: 27780
Number of extensions: 225966
Number of successful extensions: 568
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -