Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_N14
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.16c |cox8||cytochrome c oxidase subunit VIII|Schizosacc...    31   0.16 
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa...    29   0.65 
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    27   3.5  

>SPAC24C9.16c |cox8||cytochrome c oxidase subunit
           VIII|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 66

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 225 PGENLPFDINNKARLTFHMFWFFGSGFAAPFLV 323
           PG  +PF IN K   T   F  FG  F+ PF+V
Sbjct: 26  PGSTIPFYINKKPLPTLLYFGTFGVIFSIPFIV 58


>SPAC4D7.09 |tif223||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +3

Query: 204 SGSNGGIPGENLPFDINNKARLTFHMFWFFGSGFAAPFLVCVASDE 341
           +GS+  +P   LP  I NK  L + ++W   +GF +  L+C+   E
Sbjct: 55  TGSDA-LPKALLP--IGNKPMLHYPLYWLEAAGFTSAILICMEEAE 97


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = +3

Query: 159 SNRTVGKNVVKTSVRSGSNGGIPG-----ENLPFDINNKARLTF 275
           SN TVG NV  T+  S  +GG P       + P D N   RL +
Sbjct: 38  SNITVGVNVTNTTAFSKRDGGFPDGVYDCSSFPDDQNGVVRLDY 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,144
Number of Sequences: 5004
Number of extensions: 37870
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)