Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_N10
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce...   168   1e-42
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    38   0.002
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.5  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    27   3.5  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   4.7  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   8.1  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   8.1  

>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 192

 Score =  168 bits (408), Expect = 1e-42
 Identities = 80/150 (53%), Positives = 109/150 (72%)
 Frame = +2

Query: 341 MGKQRKTRKIVEKRFAKMKKMINPSDSRIKNSERSEPKKKKPVDPHVIKIREVPQTSSAL 520
           MGK + TRK     FA++K++IN  D R++  ++ + K+K   +  ++  RE+PQ +S L
Sbjct: 1   MGKAKTTRK-----FAQVKRVINLKDQRLQKKDQKKEKEKTTKNGELV--REIPQMASNL 53

Query: 521 FFQYNMQLGPPYHVLIDTNFINFSIKNKLDIIQNMMDCLYAKCIPYITDCVLGELEKLGR 700
           FFQ+N  LGPPYHV+IDTNFINF ++ K+D+ + +M CLYAK IP I+DCV+ ELEKLG 
Sbjct: 54  FFQFNESLGPPYHVIIDTNFINFCLQQKIDLFEGLMTCLYAKTIPCISDCVMAELEKLGI 113

Query: 701 KYRVALRIIKDPRFERIACLVFXKGTYADD 790
           +YR+ALRI KD RFER+ C    KGTYADD
Sbjct: 114 RYRIALRIAKDERFERLPCT--HKGTYADD 141



 Score = 35.1 bits (77), Expect = 0.013
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +3

Query: 792 CLVQRVTXHKCYIVATN 842
           C+VQRV  HKCY+VATN
Sbjct: 142 CIVQRVMQHKCYLVATN 158


>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
 Frame = +2

Query: 518 LFFQYNMQLG--PPYHVLIDTNFINFSIKNKLDIIQNMMDCLYAKCIPYITDCVLGELEK 691
           L   Y +  G   PY VL+D +F+    + K+DI   +   +     P IT C + +L  
Sbjct: 12  LMHTYQLLFGFREPYQVLVDADFLKDLSQQKIDIQAALARTVQGAIKPMITQCCIRQLYS 71

Query: 692 LGRKYRVALRIIKDPRFERIAC 757
              + +  +RI K   FER  C
Sbjct: 72  KSDELKQEIRIAKS--FERRRC 91


>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 344 GKQRKTRKIVEKRFAKMKKMINPSDSR 424
           G    +RK++ KR AK   M+  SD+R
Sbjct: 135 GPLSNSRKLIPKRSAKFSSMVGSSDTR 161


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 467 VDPHVIKIREVPQTSSALFFQYNMQLGPPYH 559
           VD   I+IR V  + +A +F   + LGPPYH
Sbjct: 16  VDEPAIQIRLV--SGNAEYFGTELALGPPYH 44


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -1

Query: 700 SSKFFQFSKDTISNIWYAFSIKTIHH 623
           S  FF FS+D      Y F IKTIHH
Sbjct: 364 SGSFFYFSRD------YRFIIKTIHH 383


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 281 NRYSNDKPYEQYDVHPILIN 222
           N Y   KPY ++ VHP L+N
Sbjct: 454 NGYVFQKPYVEFFVHPSLLN 473


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -2

Query: 255 RTVRCAPNSYKFYLLFQNASILRISDFSIIITICAHCNLH 136
           R  RC    Y FYL     SI R     I   +C  C++H
Sbjct: 316 RCFRCRRVEYFFYLDSNPLSIQRTITHFIKKLVCNECSMH 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,527,426
Number of Sequences: 5004
Number of extensions: 76144
Number of successful extensions: 204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)