Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_N10
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0419 - 2990827-2990834,2991432-2991510,2991594-2991650,299... 161 9e-40
02_03_0164 - 15862166-15862366,15862443-15862508,15862754-158630... 33 0.40
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33... 29 3.7
06_03_0498 - 21432958-21434245,21434579-21435310,21435502-214357... 29 4.9
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 28 8.6
11_06_0553 - 24920428-24921057,24921149-24921276,24921372-249214... 28 8.6
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886... 28 8.6
>06_01_0419 -
2990827-2990834,2991432-2991510,2991594-2991650,
2992307-2992394,2992626-2992698,2993020-2993089,
2993824-2993929,2994027-2994092,2994175-2994248
Length = 206
Score = 161 bits (390), Expect = 9e-40
Identities = 86/147 (58%), Positives = 101/147 (68%), Gaps = 10/147 (6%)
Frame = +2
Query: 380 RFAKMKKMINPSDSRIKNSERSEPKKKKPVDPHVIKI-REVPQTSSALFFQYNMQLGPPY 556
+FA +KK+I + + PKKK D K+ R VPQ SSALFF YN LGPPY
Sbjct: 10 KFAAVKKIITKKTIQKYKEDVLNPKKK---DNEKEKLGRNVPQVSSALFFSYNTALGPPY 66
Query: 557 HVLIDTNFINFSIKNKL---------DIIQNMMDCLYAKCIPYITDCVLGELEKLGRKYR 709
V++DTNFINFSI+NKL D+ + MMDCLYAKC P ITDCV+ ELEKLG+KYR
Sbjct: 67 RVIVDTNFINFSIQNKLNASLTPMQLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYR 126
Query: 710 VALRIIKDPRFERIACLVFXKGTYADD 790
VALRI KDPRF+R+AC KGTYADD
Sbjct: 127 VALRIAKDPRFQRLACT--HKGTYADD 151
Score = 34.7 bits (76), Expect = 0.099
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +3
Query: 792 CLVQRVTXHKCYIVAT 839
C+V+RVT HKCYIVAT
Sbjct: 152 CIVERVTQHKCYIVAT 167
>02_03_0164 -
15862166-15862366,15862443-15862508,15862754-15863029,
15864869-15864989,15865091-15865368
Length = 313
Score = 32.7 bits (71), Expect = 0.40
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 551 PYHVLIDTNFINFSIKNKLDIIQNMMDCLYAKCIP---YITDCVLGELEKLGRKY 706
PY VL+D F++ + + L + + L + P + + CVL EL +LG+ +
Sbjct: 25 PYRVLVDGTFVHHLLSHSLLPADDALQSLLSASRPPPLFTSKCVLAELRRLGKSH 79
>07_01_0042 -
334417-334431,334563-334688,334852-335136,335220-335368,
336239-336536,337030-337131,337245-337613,337973-338115,
338334-338518,339246-339475,339734-339821,340158-340253,
340397-340512,340604-340852,340950-341175,341411-341622
Length = 962
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = -2
Query: 756 HAILSNRGSLIILKATLYFLPSFSNSPRTQSVIYGMHL 643
H+ +S+ GSL +L A+ F+PS S R +++I G+H+
Sbjct: 705 HSYVSSVGSLTLLLASYSFVPS-KLSRRKRAIIGGLHV 741
>06_03_0498 -
21432958-21434245,21434579-21435310,21435502-21435788,
21435955-21436026,21436130-21436264,21436887-21436925
Length = 850
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +2
Query: 386 AKMKKMINPSDSRIKNSERSEPKKKKPVDPHVIKIREVPQTSSALFFQYNMQLGP 550
A +++P S IK +SEP+KK+ +D VI+ + + S +N++ P
Sbjct: 788 ASTSVLLDPKCSNIKGRHKSEPRKKRLID--VIRSKGLVTCSGCGSHDHNIRTCP 840
>12_02_0996 -
25115643-25115708,25115869-25116107,25116484-25116577,
25116726-25116864,25116960-25117081,25117261-25117491,
25117583-25117644,25118335-25118461,25118890-25119183,
25119266-25119622
Length = 576
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 275 YSNDKPYEQYDVHPILINFICYFKMHQY*GFPILVLLLQSAHI-AIYTLISIF 120
+ N+KP+ QYD I N C ++ G P+L ++ + +++ L++ F
Sbjct: 242 FENEKPHGQYDAIVIAHNGKCANRLLSTSGLPLLTRQMKRLQLSSVWALLAAF 294
>11_06_0553 -
24920428-24921057,24921149-24921276,24921372-24921409,
24921522-24921734,24921906-24921998,24922089-24922276,
24922396-24922502,24922614-24922775,24922870-24922953,
24923060-24923168,24923340-24923468,24923504-24923556,
24923654-24923759,24924082-24924189
Length = 715
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 498 SHKQVPHYSSNTTCS*DRH 554
SH VPH+ S T CS RH
Sbjct: 592 SHGSVPHFMSPTVCSRQRH 610
>08_02_0095 - 12285976-12286037,12286111-12287229,12287494-12288604,
12288695-12288757,12288851-12288913,12289268-12289318,
12289538-12289617,12290078-12290164,12290349-12290435,
12290889-12290975,12292106-12292308,12292756-12292922
Length = 1059
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 347 KQRKTRKIVEKRFAKMKKMINPSDSRIKNSERSEPKK 457
K ++ R+IVEK KK I + +N ++ PK+
Sbjct: 989 KPKRYRRIVEKIIESSKKKIEEQEDAEENQNKARPKR 1025
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,075,944
Number of Sequences: 37544
Number of extensions: 388137
Number of successful extensions: 886
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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