Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_N09
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.30 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.91 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 495 PXPXGGGXFXXXKXPPXPPPGXXKKKKXK 409
           P P   G     + PP PPPG  KK+K K
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -2

Query: 509 PKKXPPXPXGGGXFXXXKXPPXPPPXGXKKKK 414
           P   PP P     F     PP PPP G  KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 29.9 bits (64), Expect = 0.52
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 509 PKKXPPXPXGGGXFXXXKXPPXPPPXGXKKKK 414
           P   PP P   G     + PP PPP   KK+K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 17/47 (36%), Positives = 18/47 (38%)
 Frame = +3

Query: 474 PPPPGXXGXFFWXPXPXPPXKTPXPXFXGGGGXFXXPXGGXXXXPXI 614
           PPPPG  G     P P PP   P P    GG  +  P       P I
Sbjct: 765 PPPPGVAGA---GPPPPPP---PPPAVSAGGSRYYAPAPQAEPEPKI 805


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = -2

Query: 584 GGXKXPPPPXKPGXXGFXGGXGXXGPKKXPPXPXGGG 474
           GG    PPP  PG  G  GG G  G         GGG
Sbjct: 194 GGGSGGPPPG-PGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +2

Query: 437 GGGXGGFXXXKKXPPPXGXGXF 502
           GGG GGF      PPP G G F
Sbjct: 187 GGGFGGFGGGSGGPPP-GPGGF 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,708,349
Number of Sequences: 5004
Number of extensions: 22242
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)