Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_N08
         (999 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    28   1.8  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    28   2.4  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   7.2  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   9.5  

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +3

Query: 525 SKRPGTVKRPRCWRF--SIGS--APLTSITKIDAQVRGGETRQDYKDTGVSPGSSLVRSP 692
           S+ P T+ RP  +R   S+G+  +PL S +++D      E+  D  +TG+   +S   +P
Sbjct: 316 SRTPNTLNRPSNYRSHSSMGTRRSPLNSPSQLDPISNENESDTDDSNTGLRNRTSPTAAP 375

Query: 693 VP 698
            P
Sbjct: 376 PP 377


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -2

Query: 185 LVVVCPNSSNVSYHVSDPINPXLRWEXSAGTAGXLXDE 72
           LVV  PN  N S   S P +P LR+   A  A     E
Sbjct: 382 LVVTHPNKKNTSVSQSQPASPNLRFNMPAPLATRFLQE 419


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 752 RHASRREKGGQV---SGKRQGRNRRAHEGASR 666
           +   RRE+GG+V   SG+ + R+   HE  SR
Sbjct: 95  KRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 230 IASQISQIKHFFHCILVVVCPNSSNVSYHVS 138
           + S++S+IKH  +C L     NSS VS  VS
Sbjct: 420 VNSELSRIKHLLNCFL-----NSSTVSLDVS 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,956
Number of Sequences: 5004
Number of extensions: 57469
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)