Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_N08
         (999 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0223 - 15986763-15987575                                         32   0.62 
12_02_1188 + 26801833-26802225                                         30   3.3  
06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258           30   3.3  
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321...    30   3.3  
07_03_0478 + 18556773-18556883,18557219-18557318,18557807-185595...    29   4.4  
03_05_0868 + 28385066-28385478,28386050-28386167,28386365-283867...    29   5.8  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   7.7  

>10_08_0223 - 15986763-15987575
          Length = 270

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
 Frame = -2

Query: 728 GGQVSGKRQGRNRRAHEGASRGNACIFIVLSGFATSDLSVDFCDARQG----GGAYGKTP 561
           GG   G   G      +GA    + I +  S  +  D +  + DA  G    GG +G  P
Sbjct: 146 GGSNGGSGYGAGAGVGQGAGESGSSIAMAPSPSSGGDYNGGYADAAGGGGGGGGGHGGGP 205

Query: 560 ATRPFYGSWPFAG 522
           A  P YG    AG
Sbjct: 206 AASPSYGVGAGAG 218


>12_02_1188 + 26801833-26802225
          Length = 130

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 728 GGQVSGKRQGRNRRAHEGASRGNACIFIVLSG 633
           GG  SGKR      AHEG   G+  +++V  G
Sbjct: 33  GGGSSGKRSSSAAAAHEGVPEGHVPVYVVGEG 64


>06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258
          Length = 522

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -2

Query: 779 IPTA*XMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGNACIFIVLSGFAT 624
           IPT   +R+RH +++ +G  ++  R+ +   A E +  GN  + ++L   AT
Sbjct: 248 IPTKTNLRRRHLAKKVRGTLMAIIRERQAAAAKEDSGHGNDLLGLMLEANAT 299


>03_01_0418 -
           3211687-3211933,3212016-3212164,3212443-3212551,
           3212650-3212840,3212967-3213102,3213216-3213716,
           3213819-3213923,3214008-3214095,3214195-3214266,
           3214692-3214762,3215726-3216008,3216388-3216463
          Length = 675

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
 Frame = +3

Query: 390 PLPRSLT-RCARSFGC-GERYQLTQRR*YGYPQNQGITQERTCEQKASKRPGTVKRPRCW 563
           P P++   R    FGC     +  +R    Y + QG   E        + P TVK+ +  
Sbjct: 109 PSPKTQEKRLGSLFGCMSVPLRNNERWQQHYQEEQGGDDEWRGSSFTRREPSTVKKSKTE 168

Query: 564 RFSIGSAPLTSITKIDAQVRGGETRQDYKDTGVSPGSSLVRSPVPTLPLTGYLSAFLPS 740
           R S  S   +   KID          DYK   V+  +   RSP  T+ L  +L A  P+
Sbjct: 169 RSSRRSHERSRRGKIDLDAAEATVTLDYK-IFVATWNVGGRSPPNTMSLEDWLHAAPPA 226


>07_03_0478 +
           18556773-18556883,18557219-18557318,18557807-18559513,
           18559709-18560094,18560175-18560246,18560366-18560455
          Length = 821

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 248 MVTNKAIASQISQIKHFFHCILVVVCPNSSNVSYHVSDPIN 126
           M T +     + +I H FHC   ++  N S V+Y VSD I+
Sbjct: 571 MYTLEIFQKFLDEIGHSFHCNYSILDRNESVVTYIVSDHID 611


>03_05_0868 +
           28385066-28385478,28386050-28386167,28386365-28386726,
           28389308-28389406,28389485-28389890
          Length = 465

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 584 PPDEHHKNRRSSQRWRNPTGL*RYRRFPWKLPRALSCSDP 703
           P ++ H ++    RWRN  G  R R F     R    SDP
Sbjct: 351 PENDTHDSQHGHNRWRNTRGADRSRSFDDSFDREDDGSDP 390


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 390 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 545
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,693,529
Number of Sequences: 37544
Number of extensions: 451231
Number of successful extensions: 1337
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2928685000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)