Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_N08
         (999 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p...    29   5.2  
AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical ...    29   6.8  

>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +1

Query: 547 KGRVAGVFXXXXXXXRASQKSTLKSEVA-KPDRTIKIQAFPLEAPSCALLFRPCRLPDTC 723
           K +V   F          +   L+ E+  KP+  +++   PL  P+   L  PC  P+  
Sbjct: 518 KEQVQQAFEEQRKRTERKEIKKLEKEIKPKPELKVEVPVEPLVVPTSKPLEEPC--PEAL 575

Query: 724 PPFSLREAWRFLIXHA 771
           PP  + +   + + H+
Sbjct: 576 PPPKINDGIHWTVIHS 591


>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +1

Query: 547 KGRVAGVFXXXXXXXRASQKSTLKSEVA-KPDRTIKIQAFPLEAPSCALLFRPCRLPDTC 723
           K +V   F          +   L+ E+  KP+  +++   PL  P+   L  PC  P+  
Sbjct: 518 KEQVQQAFEEQRKRTERKEIKKLEKEIKPKPELKVEVPVEPLVVPTSKPLEEPC--PEAL 575

Query: 724 PPFSLREAWRFLIXHA 771
           PP  + +   + + H+
Sbjct: 576 PPPKINDGIHWTVIHS 591


>AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical
           protein Y50D4C.5 protein.
          Length = 540

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 569 FHRLRPPDEHHKNRRSSQRW-RNPTGL*RYRRFPWKLPRALSCSDPA 706
           F+ + PP+ H++ R  +Q +  N T    Y + PW  PR  + +DPA
Sbjct: 7   FNPISPPNNHYRPRSPTQSYSSNAT---NYEQ-PWNSPRFRAPADPA 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,499,765
Number of Sequences: 27780
Number of extensions: 349442
Number of successful extensions: 911
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2615559500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)