Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_N05
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.9  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    22   8.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   8.6  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   8.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 296 MR*TKNTGGKKYLRKVD 246
           M+ TK T   KYLRKVD
Sbjct: 503 MKPTKGTELLKYLRKVD 519


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 461 MIKLLVMMLIAIMFSIRQMIHQPLRLFIRWDSREHHR 351
           ++ LL M ++AIM +  +   +PL  F   +  + HR
Sbjct: 6   IVGLLFMAMVAIMAAPVEDEFEPLEHFENEERADRHR 42


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = +3

Query: 432 NEHHNKQFDHDAFLGEDQAKTFDQLSPEESKRRLGEIADKIDSDQDGFITLVELKDWI 605
           N  H KQ  HD  L   Q    D+      K    E+A +I   ++    +V+  D +
Sbjct: 296 NTDHTKQLSHDVLLRAKQIGFSDKQIASVVKS--SELAVRIQRQENNIRPMVKQIDTV 351


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 461 MIKLLVMMLIAIMFSIRQMIHQPLRLFIRWDSREHHR 351
           ++ LL M ++AIM +  +   +PL  F   +  + HR
Sbjct: 6   IVGLLFMAMVAIMAAPVEDEFEPLEHFENEERADRHR 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,463
Number of Sequences: 438
Number of extensions: 5351
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)