Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_N04
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...   240   2e-64
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    28   1.6  

>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score =  240 bits (587), Expect = 2e-64
 Identities = 118/187 (63%), Positives = 139/187 (74%), Gaps = 3/187 (1%)
 Frame = +3

Query: 234 QLFQQDRERFEKFSFCIP--TPNDGDILLDYSKNRINSDVFKLLLDLAKSRNVEQARDAM 407
           +LF +D  RFEKFSF        DG IL D+SKN I  +  +LL+ LAK  NVE  RDA+
Sbjct: 30  ELFAKDSSRFEKFSFTFNGLKEEDGPILFDFSKNLITEETVELLVKLAKEANVEGLRDAL 89

Query: 408 FSGQKINFTEDRAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGY 587
           F+G+ INFTEDRAV H ALRN   KP+ VNG+DV   V  VL HMKEFSD V SG WKGY
Sbjct: 90  FAGEHINFTEDRAVFHPALRNVSEKPMKVNGQDVMPGVRKVLRHMKEFSDAVRSGAWKGY 149

Query: 588 TGKAITDVINIGIGGSDLGPLMVTEALKPYA-NHLKVHFVSNIDGTHLAEVLKKLNPETA 764
           TGK I  ++N+GIGGSDLGP+MVTEALKPY   +L++HFVSNIDGTHLAE LKK +PET 
Sbjct: 150 TGKPIKSIVNVGIGGSDLGPVMVTEALKPYGQENLELHFVSNIDGTHLAEALKKCDPETT 209

Query: 765 LFIIASR 785
           LF+IAS+
Sbjct: 210 LFLIASK 216


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
 Frame = +3

Query: 462 LRNRQN--KPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYTGKAITDVINIGIGGS 635
           + NR N  KP+ +  KD   +     EH K+  D  +SG      G  +++ IN      
Sbjct: 668 ITNRLNAKKPLFIESKDFGDNPLDTFEHYKQSVDAGLSGMLFSVIGGRLSEGINF---SD 724

Query: 636 DLGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPETA 764
            LG  ++   + P+ N   V + + +         K +N + A
Sbjct: 725 KLGRAVMVVGM-PFPNSQDVEWQAKVSYVEEKAKEKGINAKQA 766


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,515
Number of Sequences: 5004
Number of extensions: 53660
Number of successful extensions: 146
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)