Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_N03
         (923 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       32   0.56 
12_02_1174 - 26696869-26698191                                         29   6.9  
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     29   6.9  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 20/48 (41%), Positives = 20/48 (41%)
 Frame = -1

Query: 626 PXXGXXXXPPXGXGKXXPPPXXXGAGXFXGGXGXXXQKKXPXXPGGGG 483
           P  G    PP G G   PP    GAG   GG G       P  PGGGG
Sbjct: 100 PLGGGGARPPGGGGGGGPPSLPPGAG---GGGG-----ARPPAPGGGG 139


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = +1

Query: 673 PKXXXGPVLGVXXXXPPPPKKXIKKXXXXXXGGEXPPXKXKKPRVXPPXKPXXGPP 840
           P+    P L      PPPP+   +           PP K + P   PP  P   PP
Sbjct: 111 PEFKTPPALSPVPPPPPPPRTRTRVEPPH----RPPPVKPQPPPSLPPPPPPPPPP 162


>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
 Frame = +1

Query: 643 KFFXKGXXKGPKXXXGPVLGVXXXXPPP-PKKXIKKXXXXXXGGEX---PPXKXKKPRVX 810
           K F  G   GPK    P        P P P K   K      G +    PP    KP+  
Sbjct: 151 KCFHHGPKPGPKPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPK 210

Query: 811 PPX---KPXXGPP 840
           PP    KP  GPP
Sbjct: 211 PPKPGPKPKPGPP 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,298,976
Number of Sequences: 37544
Number of extensions: 331921
Number of successful extensions: 767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)