Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_N03
(923 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 35 0.094
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 35 0.094
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 35 0.094
Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 31 1.5
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 29 4.7
AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like ... 29 6.2
AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like ... 29 6.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 8.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 8.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 8.2
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 34.7 bits (76), Expect = 0.094
Identities = 31/118 (26%), Positives = 33/118 (27%), Gaps = 7/118 (5%)
Frame = +1
Query: 529 PXPPKKXPAPXXXGGGXXFPXPXGGXXXXPKXGXXPXKKFFXKGXXKGPKXXXGPVLGVX 708
P PP +P G G P P G P+ G P G P P
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP---PTGSPPPPPAGGSPPPPRA 294
Query: 709 XXXPPPP----KKXIKKXXXXXXGGEXPPXKXKKPRVXPPXK---PXXGPPFFXXPXG 861
PPPP GG PP P P K P PP P G
Sbjct: 295 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTG 352
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = +2
Query: 722 PPPKKX*KNXPXXXGGGKXPXXNXKNXGXPPXXNPPXXPP 841
PPP K P G G P PP P PP
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPP 276
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 34.7 bits (76), Expect = 0.094
Identities = 31/118 (26%), Positives = 33/118 (27%), Gaps = 7/118 (5%)
Frame = +1
Query: 529 PXPPKKXPAPXXXGGGXXFPXPXGGXXXXPKXGXXPXKKFFXKGXXKGPKXXXGPVLGVX 708
P PP +P G G P P G P+ G P G P P
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP---PTGSPPPPPAGGSPPPPRA 315
Query: 709 XXXPPPP----KKXIKKXXXXXXGGEXPPXKXKKPRVXPPXK---PXXGPPFFXXPXG 861
PPPP GG PP P P K P PP P G
Sbjct: 316 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTG 373
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = +2
Query: 722 PPPKKX*KNXPXXXGGGKXPXXNXKNXGXPPXXNPPXXPP 841
PPP K P G G P PP P PP
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPP 297
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 34.7 bits (76), Expect = 0.094
Identities = 31/118 (26%), Positives = 33/118 (27%), Gaps = 7/118 (5%)
Frame = +1
Query: 529 PXPPKKXPAPXXXGGGXXFPXPXGGXXXXPKXGXXPXKKFFXKGXXKGPKXXXGPVLGVX 708
P PP +P G G P P G P+ G P G P P
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP---PTGSPPPPPAGGSPPPPRA 300
Query: 709 XXXPPPP----KKXIKKXXXXXXGGEXPPXKXKKPRVXPPXK---PXXGPPFFXXPXG 861
PPPP GG PP P P K P PP P G
Sbjct: 301 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTG 358
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = +2
Query: 722 PPPKKX*KNXPXXXGGGKXPXXNXKNXGXPPXXNPPXXPP 841
PPP K P G G P PP P PP
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPP 282
>Z81525-6|CAB82206.2| 346|Caenorhabditis elegans Hypothetical
protein F33A8.9 protein.
Length = 346
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = +3
Query: 486 PPPXGXGXFFLXPXPXXPXKXPGPXXXGGGXGFSXPXG 599
P P G F++ P P PGP GG G P G
Sbjct: 222 PGPTGPKNFYITSGPPGPPGPPGPPGNPGGIGPRGPPG 259
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 30.7 bits (66), Expect = 1.5
Identities = 29/111 (26%), Positives = 36/111 (32%), Gaps = 9/111 (8%)
Frame = +1
Query: 529 PXPPKKXPAPXXXGGGXXFPXPXGGXXXXPKXGXXPXKKFFXKGXXKG-PKXXXGPVLGV 705
P P PAP G G P P G P F +G G P G G
Sbjct: 710 PGIPGYPPAPPPPGVG---PPPPQGIPPMGFDPNKPPPPMFQQGFNAGAPPPPFGRGAGP 766
Query: 706 XXXXPPPPKKXIK--------KXXXXXXGGEXPPXKXKKPRVXPPXKPXXG 834
PPPP+ + + GG PP ++ PP +P G
Sbjct: 767 MSSFPPPPRGGMHHMPPPPSFRGGRGGHGGPPPPHFDRRGGGGPPFRPENG 817
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 29.1 bits (62), Expect = 4.7
Identities = 28/104 (26%), Positives = 30/104 (28%), Gaps = 1/104 (0%)
Frame = +1
Query: 529 PXP-PKKXPAPXXXGGGXXFPXPXGGXXXXPKXGXXPXKKFFXKGXXKGPKXXXGPVLGV 705
P P PK P P P P PK P K K K PK P
Sbjct: 181 PDPKPKPKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPKPKPKPKPK-PKPKPNPNPKP 239
Query: 706 XXXXPPPPKKXIKKXXXXXXGGEXPPXKXKKPRVXPPXKPXXGP 837
P PK + E P KP+ P KP P
Sbjct: 240 EPKPKPKPKPKPEPKPKTKLKSEPKPKPKLKPKPKPNPKPEPNP 283
>AC024847-11|AAO21416.1| 453|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform b protein.
Length = 453
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +3
Query: 498 GXGXFFLXPXPXXPXKXPGPXXXGGGXGFSXPXGG 602
G G + P P P GGG G++ P GG
Sbjct: 51 GGGGSYAAAPALPPPPPPPPAPIGGGAGYAAPFGG 85
>AC024847-10|AAF60859.1| 393|Caenorhabditis elegans Ground-like
(grd related) protein16, isoform a protein.
Length = 393
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +3
Query: 498 GXGXFFLXPXPXXPXKXPGPXXXGGGXGFSXPXGG 602
G G + P P P GGG G++ P GG
Sbjct: 51 GGGGSYAAAPALPPPPPPPPAPIGGGAGYAAPFGG 85
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -1
Query: 635 GXXPXXGXXXXPPXGXGKXXPPPXXXGAGXFXGG 534
G P G PP G PPP G F GG
Sbjct: 750 GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -1
Query: 635 GXXPXXGXXXXPPXGXGKXXPPPXXXGAGXFXGG 534
G P G PP G PPP G F GG
Sbjct: 750 GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -1
Query: 635 GXXPXXGXXXXPPXGXGKXXPPPXXXGAGXFXGG 534
G P G PP G PPP G F GG
Sbjct: 333 GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,108,852
Number of Sequences: 27780
Number of extensions: 207151
Number of successful extensions: 777
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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