Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_N01
(872 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D55BE7 Cluster: PREDICTED: similar to CG3165-PA;... 142 1e-32
UniRef50_Q5TQT2 Cluster: ENSANGP00000026876; n=1; Anopheles gamb... 126 1e-27
UniRef50_Q0C7B5 Cluster: Three prime repair exonuclease 1, putat... 123 7e-27
UniRef50_Q6QH49 Cluster: 3' repair exonuclease; n=4; Nucleopolyh... 105 1e-21
UniRef50_UPI00015B57E4 Cluster: PREDICTED: similar to three prim... 102 1e-20
UniRef50_Q9BQ50 Cluster: Three prime repair exonuclease 2; n=16;... 99 2e-19
UniRef50_Q9VQJ7 Cluster: CG3165-PA; n=2; Sophophora|Rep: CG3165-... 97 5e-19
UniRef50_UPI000069F3E4 Cluster: UPI000069F3E4 related cluster; n... 94 4e-18
UniRef50_A7SCZ1 Cluster: Predicted protein; n=1; Nematostella ve... 91 3e-17
UniRef50_UPI0000E49E75 Cluster: PREDICTED: similar to three prim... 88 3e-16
UniRef50_UPI0000E46C7F Cluster: PREDICTED: similar to Three prim... 85 3e-15
UniRef50_Q9NSU2 Cluster: Three prime repair exonuclease 1; n=17;... 75 2e-12
UniRef50_Q5DB02 Cluster: SJCHGC02520 protein; n=2; Schistosoma j... 71 3e-11
UniRef50_UPI0000E47DC6 Cluster: PREDICTED: similar to 3-5 exonuc... 53 8e-06
UniRef50_A4AXV6 Cluster: Putative uncharacterized protein; n=2; ... 43 0.009
UniRef50_A5TTA5 Cluster: DNA-directed DNA polymerase III alpha s... 42 0.027
UniRef50_A7TF41 Cluster: Putative uncharacterized protein; n=1; ... 41 0.036
UniRef50_P54394 Cluster: Probable ATP-dependent helicase dinG ho... 39 0.14
UniRef50_Q3SKJ9 Cluster: DNA polymerase III, epsilon subunit; n=... 39 0.19
UniRef50_A6DDM5 Cluster: DNA polymerase III, epsilon chain; n=1;... 38 0.25
UniRef50_A2U0G0 Cluster: DNA Pol III Epsilon Chain; n=2; Polarib... 38 0.25
UniRef50_P47277 Cluster: DNA polymerase III polC-type; n=10; Myc... 38 0.25
UniRef50_Q2S3Z9 Cluster: Exonuclease, putative; n=1; Salinibacte... 38 0.44
UniRef50_P74918 Cluster: DNA polymerase (EC 2.7.7.7) (Pol Tfu) [... 38 0.44
UniRef50_Q88WB1 Cluster: ATP-dependent helicase DinG; n=2; Lacto... 37 0.58
UniRef50_Q7NZA2 Cluster: Probable DNA-directed DNA polymerase II... 37 0.58
UniRef50_Q26FQ2 Cluster: DNA polymerase III, epsilon subunit; n=... 37 0.77
UniRef50_A4C086 Cluster: DNA polymerase III subunit; n=2; Polari... 37 0.77
UniRef50_A6EU25 Cluster: DNA polymerase III, epsilon subunit; n=... 36 1.0
UniRef50_Q8EUK5 Cluster: DNA polymerase III subunit alpha; n=1; ... 36 1.3
UniRef50_Q7NC15 Cluster: PolC; n=1; Mycoplasma gallisepticum|Rep... 36 1.3
UniRef50_Q6YQB0 Cluster: DNA polymerase III alpha subunit; n=2; ... 36 1.3
UniRef50_A7PQT3 Cluster: Chromosome chr6 scaffold_25, whole geno... 36 1.8
UniRef50_Q8IET6 Cluster: Putative uncharacterized protein PF13_0... 36 1.8
UniRef50_Q9PBI7 Cluster: DNA polymerase III, epsilon chain; n=6;... 35 2.3
UniRef50_A0LZ46 Cluster: Exonuclease family protein; n=10; Flavo... 35 2.3
UniRef50_O59610 Cluster: DNA polymerase (EC 2.7.7.7) [Contains: ... 35 2.3
UniRef50_A5VK04 Cluster: DnaQ family exonuclease/DinG family hel... 35 3.1
UniRef50_Q55G17 Cluster: Putative uncharacterized protein; n=1; ... 35 3.1
UniRef50_A5F9M6 Cluster: DNA polymerase III, epsilon subunit rel... 34 4.1
UniRef50_Q5FJX1 Cluster: ATP-dependent DNA helicase; n=5; Lactob... 34 5.4
UniRef50_A5ZQC7 Cluster: Putative uncharacterized protein; n=1; ... 34 5.4
UniRef50_A3JBF5 Cluster: Putative uncharacterized protein; n=2; ... 34 5.4
UniRef50_A5DU53 Cluster: Putative uncharacterized protein; n=1; ... 33 7.2
UniRef50_Q3IPS5 Cluster: Putative uncharacterized protein; n=1; ... 33 7.2
UniRef50_Q6QXG1 Cluster: DNA polymerase; n=10; Granulovirus|Rep:... 33 9.5
>UniRef50_UPI0000D55BE7 Cluster: PREDICTED: similar to CG3165-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG3165-PA - Tribolium castaneum
Length = 319
Score = 142 bits (343), Expect = 1e-32
Identities = 81/206 (39%), Positives = 121/206 (58%), Gaps = 19/206 (9%)
Frame = +2
Query: 140 MVRIETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLY 319
M +I+TFVF+DLETT +P + N TRITE+ V+V+ +HI G PRVQ KL+LC
Sbjct: 28 MSQIKTFVFLDLETTGLPHLEHNKTRITELCAVSVRADHI---ELGCFPRVQNKLSLCFN 84
Query: 320 PRKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPIL 499
P K IS AT +T LSN+LLE++ F+ + +I +L + +P CL+A+NG+ FD+PIL
Sbjct: 85 PMKMISPEATSLTGLSNDLLEYQASFSSDAVDVIRKWLEMNQKPICLVAHNGNRFDYPIL 144
Query: 500 KNQLEKLKVMFSRDVFCADCLYGFYDIDSI---------KSNLNMQETDCTDE-----ID 637
+ ++EK + D+ C D L F ID++ K + + D DE +D
Sbjct: 145 RAEVEKTRNKLPEDILCLDSLNAFRSIDTLEAEAVKQPPKGEIPFEFNDGYDELLSQAVD 204
Query: 638 FYKPSTSM-----QNINESTPKRQKL 700
Y+ + Q INE+TP++QK+
Sbjct: 205 EYEKQMKLTPEQVQKINETTPQKQKI 230
>UniRef50_Q5TQT2 Cluster: ENSANGP00000026876; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000026876 - Anopheles gambiae
str. PEST
Length = 322
Score = 126 bits (303), Expect = 1e-27
Identities = 60/149 (40%), Positives = 92/149 (61%)
Frame = +2
Query: 140 MVRIETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLY 319
MV +++FVF DLETT +P + T+ITE+S+VA R H++ E PRV KL+LC
Sbjct: 1 MVELKSFVFFDLETTGLPEYEHFRTKITELSMVACAREHLLEAST-EPPRVTHKLSLCFN 59
Query: 320 PRKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPIL 499
P + I+ G+++ T L N+LLE E F+ +++ FL +P CL+A+NG FDF +L
Sbjct: 60 PHRMITLGSSQATGLYNDLLEKEAKFDANAGEMVKLFLERLQKPVCLVAHNGQRFDFILL 119
Query: 500 KNQLEKLKVMFSRDVFCADCLYGFYDIDS 586
K L ++ V D++C D L F +I++
Sbjct: 120 KQHLLRIDVALPGDLYCVDSLPAFREIEA 148
>UniRef50_Q0C7B5 Cluster: Three prime repair exonuclease 1,
putative; n=1; Aedes aegypti|Rep: Three prime repair
exonuclease 1, putative - Aedes aegypti (Yellowfever
mosquito)
Length = 320
Score = 123 bits (296), Expect = 7e-27
Identities = 77/202 (38%), Positives = 110/202 (54%), Gaps = 17/202 (8%)
Frame = +2
Query: 146 RIETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYPR 325
++ +FVF DLETTD+ T +ITEISL+A R H+++T GE PRV K T CL P+
Sbjct: 4 QLGSFVFFDLETTDLIGI--KTPKITEISLIACSRKHLLDTKRGELPRVLHKQTFCLNPQ 61
Query: 326 KFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKN 505
+ I A+E T L N+LLE E F+ ++I FL P CL+A+NG+ FDF ILK
Sbjct: 62 RMIHPRASETTGLYNDLLEDESKFDENTAQLIVLFLRRLQAPTCLVAHNGNRFDFVILKK 121
Query: 506 QLEKLKVMFSRDVFCADCLYGFYDIDSIK---------------SNLNMQETDCTDEIDF 640
+LE L D +C D L F ++ + ++L + +E++
Sbjct: 122 ELESLNAQLPDDTYCVDSLPLFQALEQAREQKAKAAQENADNELADLELCALTAMEELE- 180
Query: 641 YKPST--SMQNINESTPKRQKL 700
PST MQ NE+TP+R K+
Sbjct: 181 GSPSTLSLMQKRNETTPQRGKI 202
>UniRef50_Q6QH49 Cluster: 3' repair exonuclease; n=4;
Nucleopolyhedrovirus|Rep: 3' repair exonuclease -
Anticarsia gemmatalis nuclear polyhedrosis virus
(AgMNPV)
Length = 230
Score = 105 bits (253), Expect = 1e-21
Identities = 58/147 (39%), Positives = 87/147 (59%)
Frame = +2
Query: 140 MVRIETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLY 319
M ++T+VF+DLETT +P+ + T+ITE+SL V R ++ RV KLTLC
Sbjct: 1 MAVVKTYVFLDLETTGLPKLQNDQTQITELSLQCVTREELLGAA-----RVCNKLTLCFE 55
Query: 320 PRKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPIL 499
P IS A+ +T+L+ E L +P F+ +I++FL++ + P CL+AYNG +FDFPIL
Sbjct: 56 PTVPISEQASALTQLNAENLRGQPLFDKRAVALIESFLALLSPPVCLVAYNGFAFDFPIL 115
Query: 500 KNQLEKLKVMFSRDVFCADCLYGFYDI 580
L+ F+ V CAD + + I
Sbjct: 116 YKHLKDNG--FASAVQCADAYHALFAI 140
>UniRef50_UPI00015B57E4 Cluster: PREDICTED: similar to three prime
repair exonuclease 1, putative; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to three prime
repair exonuclease 1, putative - Nasonia vitripennis
Length = 325
Score = 102 bits (244), Expect = 1e-20
Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 2/156 (1%)
Frame = +2
Query: 146 RIETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGET--PRVQQKLTLCLY 319
+I+TFVF DLET+D+ + RITE+S+VA RN + N + PR+ KLT+ +
Sbjct: 11 KIDTFVFFDLETSDLIKGH-RMPRITELSMVATDRNSLKNDMRDKLALPRIMHKLTIPIC 69
Query: 320 PRKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPIL 499
P I A+ + L N+ LEH PF+ + + +I F++ C +A+NG+ FD+P+
Sbjct: 70 PNAPIHQEASFASNLWNDSLEHFKPFDKDTYNMIMLFINRLPGVICFVAHNGNRFDYPVF 129
Query: 500 KNQLEKLKVMFSRDVFCADCLYGFYDIDSIKSNLNM 607
++++KL++ F + C D L F + S NM
Sbjct: 130 LSEIDKLQMTFPDRILCVDTLIAFKEFFSDAQPANM 165
>UniRef50_Q9BQ50 Cluster: Three prime repair exonuclease 2; n=16;
Mammalia|Rep: Three prime repair exonuclease 2 - Homo
sapiens (Human)
Length = 279
Score = 98.7 bits (235), Expect = 2e-19
Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 7/161 (4%)
Frame = +2
Query: 137 EMVRIETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGET-----PRVQQK 301
E R ETFVF+DLE T +P + I E+SL AV R+ + N E+ PRV K
Sbjct: 46 EAPRAETFVFLDLEATGLPSVE---PEIAELSLFAVHRSSLENPEHDESGALVLPRVLDK 102
Query: 302 LTLCLYPRKFISTGATEVTKLSNELLEH--EPPFNLEVFKIIDTFLSIFTEPACLIAYNG 475
LTLC+ P + + A+E+T LS+E L + F+ V + + FLS P CL+A+NG
Sbjct: 103 LTLCMCPERPFTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNG 162
Query: 476 HSFDFPILKNQLEKLKVMFSRDVFCADCLYGFYDIDSIKSN 598
+DFP+L +L +L RD C D L +D S+
Sbjct: 163 FDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSH 203
>UniRef50_Q9VQJ7 Cluster: CG3165-PA; n=2; Sophophora|Rep: CG3165-PA
- Drosophila melanogaster (Fruit fly)
Length = 351
Score = 97.1 bits (231), Expect = 5e-19
Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 10/168 (5%)
Frame = +2
Query: 137 EMVRIETFVFVDLETTDVPRNDGNTTRITEISLVAVK----------RNHIVNTPFGETP 286
E +I TF +DLETT++P N ITE+ + A + ++ P
Sbjct: 13 EQPKISTFAVLDLETTNLPAYRNNRVSITELCIYAFEAALLKKKKKEQDQDEQQELPAAP 72
Query: 287 RVQQKLTLCLYPRKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIA 466
RV KL + P + A +T LSN LLE E + + ++I +FL P CL+A
Sbjct: 73 RVLHKLNVLFQPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVA 132
Query: 467 YNGHSFDFPILKNQLEKLKVMFSRDVFCADCLYGFYDIDSIKSNLNMQ 610
+NG FDFPIL+ EKL + + + C D L F +ID + Q
Sbjct: 133 HNGWGFDFPILRQAFEKLNIELPQSLTCVDSLRAFMEIDDTQQKETSQ 180
>UniRef50_UPI000069F3E4 Cluster: UPI000069F3E4 related cluster; n=1;
Xenopus tropicalis|Rep: UPI000069F3E4 UniRef100 entry -
Xenopus tropicalis
Length = 228
Score = 94.3 bits (224), Expect = 4e-18
Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 6/147 (4%)
Frame = +2
Query: 149 IETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGET----PRVQQKLTLCL 316
+++FVF+DLE T + + N +ITE+ LVAV + + N ++ PRV KL LC+
Sbjct: 5 VKSFVFLDLEATGL---NYNLPKITELCLVAVHVSSLENPETDQSEVQLPRVLDKLCLCV 61
Query: 317 YPRKFISTGATEVTKLSNELLEH--EPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDF 490
P+K I+ A +T LSNE L + +P FNL + +++ FL+ +P CL+A+NG +DF
Sbjct: 62 DPKKPITKEACNITGLSNEKLANCEKPCFNLNLVQLVKEFLNRQAQPVCLVAHNGLFYDF 121
Query: 491 PILKNQLEKLKVMFSRDVFCADCLYGF 571
P+LK + ++ + C D L F
Sbjct: 122 PLLKAEFQQQNEELPGSLLCLDSLKAF 148
>UniRef50_A7SCZ1 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 201
Score = 91.1 bits (216), Expect = 3e-17
Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 1/140 (0%)
Frame = +2
Query: 155 TFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGET-PRVQQKLTLCLYPRKF 331
TF+F+DLETT + R ITEI L+AV+++H++ +T PR+ KL++C+ P +
Sbjct: 1 TFIFLDLETTGLRR----PIEITEICLIAVQKDHLLRAAETKTEPRLIDKLSICVKPVQN 56
Query: 332 ISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQL 511
I GA+ +T ++ L + F+ ++ K+I TFL P+CL+A++G FDF IL ++
Sbjct: 57 IECGASSITGINKMDLAEKREFDRKLAKVIKTFLRRQPSPSCLVAHSGDRFDFDILASEF 116
Query: 512 EKLKVMFSRDVFCADCLYGF 571
V F ++ AD F
Sbjct: 117 VNAGVKFPSEIQAADSWKAF 136
>UniRef50_UPI0000E49E75 Cluster: PREDICTED: similar to three prime
repair exonuclease 1, putative; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to three prime repair
exonuclease 1, putative - Strongylocentrotus purpuratus
Length = 534
Score = 87.8 bits (208), Expect = 3e-16
Identities = 58/162 (35%), Positives = 86/162 (53%), Gaps = 21/162 (12%)
Frame = +2
Query: 149 IETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGET--------------- 283
I +FVF+D ET+ + D +I E+SL+AV RN ++N+ +
Sbjct: 119 INSFVFLDFETSHLLSKDH--PKIIELSLIAVNRNGLLNSDVHTSLNCARKGNFTFDLSK 176
Query: 284 ---PRVQQKLTLCLYPRKFISTGATEVTKLSNELLEHEP--PFNLEVFKIIDTFLSIFTE 448
PR+ KLTLC+ PRK S + +TKL L+ PF+ +V +I FLS
Sbjct: 177 VSLPRIIDKLTLCVDPRKSTSPQSARITKLDKRNLDKNKKLPFDEDVICMIKLFLSRQEA 236
Query: 449 PACLIAYNGHSFDFPILKNQLEKLKV-MFSRDVFCADCLYGF 571
P CL+A+NG FDF IL+++L ++ S D++C D L GF
Sbjct: 237 PVCLVAHNGLRFDFAILRSELSRMTTGDLSADLYCVDSLSGF 278
>UniRef50_UPI0000E46C7F Cluster: PREDICTED: similar to Three prime
repair exonuclease 1; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to Three prime repair
exonuclease 1 - Strongylocentrotus purpuratus
Length = 438
Score = 84.6 bits (200), Expect = 3e-15
Identities = 58/163 (35%), Positives = 87/163 (53%), Gaps = 22/163 (13%)
Frame = +2
Query: 149 IETFVFVDLETTD-VPRNDGNTTRITEISLVAVKRNHIVNTPFGET-------------- 283
I +FVF+D ET+ +PR+ +I E+SL+AV R ++N+
Sbjct: 9 INSFVFLDFETSHLIPRD---RPKIIELSLIAVNRTGLLNSDVHTALNCARKENFTFDLS 65
Query: 284 ----PRVQQKLTLCLYPRKFISTGATEVTKLSNELLEHEP--PFNLEVFKIIDTFLSIFT 445
PR+ KLTLC+ PRK S + E+TKL L+ PF+ +V +++ FLS
Sbjct: 66 KVTLPRIIDKLTLCVDPRKDTSPQSAELTKLDKHNLDKNKKLPFDEDVIAMLNIFLSRQE 125
Query: 446 EPACLIAYNGHSFDFPILKNQLEKLKVMFS-RDVFCADCLYGF 571
P CL+A+NG FDF IL+++L +L D++C D L GF
Sbjct: 126 APVCLVAHNGMRFDFAILRSELSQLTTGDPLADLYCVDSLSGF 168
>UniRef50_Q9NSU2 Cluster: Three prime repair exonuclease 1; n=17;
Theria|Rep: Three prime repair exonuclease 1 - Homo
sapiens (Human)
Length = 369
Score = 74.9 bits (176), Expect = 2e-12
Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 11/149 (7%)
Frame = +2
Query: 149 IETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGE--------TPRVQQKL 304
++T +F D+E T +P + ++TE+ L+AV R + + P + PRV KL
Sbjct: 66 MQTLIFFDMEATGLPFSQ---PKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDKL 122
Query: 305 TLCLYPRKFISTGATEVTKLSNELLE-H-EPPFNLEVFKIIDTFLSIFTEPACLIAYNGH 478
+LC+ P K S A+E+T LS +L H F+ + ++ FL +P CL+A+NG
Sbjct: 123 SLCVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGD 182
Query: 479 SFDFPILKNQLEKLKVMFSRD-VFCADCL 562
+DFP+L+ +L L + + D FC D +
Sbjct: 183 RYDFPLLQAELAMLGLTSALDGAFCVDSI 211
>UniRef50_Q5DB02 Cluster: SJCHGC02520 protein; n=2; Schistosoma
japonicum|Rep: SJCHGC02520 protein - Schistosoma
japonicum (Blood fluke)
Length = 228
Score = 71.3 bits (167), Expect = 3e-11
Identities = 31/82 (37%), Positives = 52/82 (63%)
Frame = +2
Query: 278 ETPRVQQKLTLCLYPRKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPAC 457
+ PRV+ KLTLC P + IS+ A++++ L+++ L H+ F+ +I FL+ P C
Sbjct: 14 DEPRVENKLTLCFNPTRTISSIASKISGLNSDNLFHQKDFDSSAVDLIQLFLNRLDSPVC 73
Query: 458 LIAYNGHSFDFPILKNQLEKLK 523
+A+NG FDFP+L+ Q+ +K
Sbjct: 74 FVAHNGLRFDFPLLRAQIMSVK 95
>UniRef50_UPI0000E47DC6 Cluster: PREDICTED: similar to 3-5
exonuclease TREX1; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to 3-5 exonuclease
TREX1 - Strongylocentrotus purpuratus
Length = 241
Score = 53.2 bits (122), Expect = 8e-06
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Frame = +2
Query: 353 VTKLSNELLEHEPPFNLE--VFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLEKLKV 526
+T L N L +L+ + +++ FL P CL+A+NG FDFP+L+ +L +L
Sbjct: 45 LTGLDNYNLGESKKMSLDKDIISMLNIFLKRQEGPVCLVAHNGKRFDFPMLRTELSRLTA 104
Query: 527 -MFSRDVFCADCLYGF 571
D+FCAD L GF
Sbjct: 105 EELFEDLFCADSLEGF 120
>UniRef50_A4AXV6 Cluster: Putative uncharacterized protein; n=2;
Proteobacteria|Rep: Putative uncharacterized protein -
Alteromonas macleodii 'Deep ecotype'
Length = 715
Score = 43.2 bits (97), Expect = 0.009
Identities = 38/133 (28%), Positives = 66/133 (49%)
Frame = +2
Query: 152 ETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYPRKF 331
+ +V VD+ETT + + RITEI +V + E R Q TL L P++
Sbjct: 541 QPYVVVDIETTG---GNNSYNRITEIGMVKLVGGK-------EVDRFQ---TL-LNPQRR 586
Query: 332 ISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQL 511
I + T +T +S++++ P +F + ++ FTE A +A+N +FD+ +K +
Sbjct: 587 IPSSITRLTGISDDMVADAP-----LFAEVADHIASFTEDAVFVAHN-VNFDYGFIKQEF 640
Query: 512 EKLKVMFSRDVFC 550
+L+ F R C
Sbjct: 641 ARLEQSFRRPKMC 653
>UniRef50_A5TTA5 Cluster: DNA-directed DNA polymerase III alpha
subunit; n=4; Fusobacterium nucleatum|Rep: DNA-directed
DNA polymerase III alpha subunit - Fusobacterium
nucleatum subsp. polymorphum ATCC 10953
Length = 1454
Score = 41.5 bits (93), Expect = 0.027
Identities = 37/122 (30%), Positives = 58/122 (47%)
Frame = +2
Query: 152 ETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYPRKF 331
E FV D+ETT + + +T I EI V +K IV+ R Q + P +
Sbjct: 425 EEFVVFDIETTGL---NSHTNEIIEIGAVKIKAGRIVD-------RYSQLIN----PGRP 470
Query: 332 ISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQL 511
I TE+T +++E + +EP + + K ID F A L+A+N FD +K +
Sbjct: 471 IPYHITEITSITDEQVANEPKIDEVIGKFID-----FVGDAVLVAHNA-PFDMGFIKRDV 524
Query: 512 EK 517
+K
Sbjct: 525 KK 526
>UniRef50_A7TF41 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 693
Score = 41.1 bits (92), Expect = 0.036
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 500 KNQLEKLKVMFSRDVFCADCLYGFYDIDSIKSNLNMQETDCT-DEIDFYKPSTSMQNI 670
K+ L LK M S DVF DC Y + I+S L Q++ T DEI YK M N+
Sbjct: 165 KSPLSSLKTMLSADVFTEDC----YKKEEIRSRLQRQDSISTLDEITMYKDERGMDNV 218
>UniRef50_P54394 Cluster: Probable ATP-dependent helicase dinG
homolog; n=5; Bacillus|Rep: Probable ATP-dependent
helicase dinG homolog - Bacillus subtilis
Length = 931
Score = 39.1 bits (87), Expect = 0.14
Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Frame = +2
Query: 152 ETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYPRKF 331
+ FV +D+ETT G+ +I +I+ V + E ++ ++ + + P K
Sbjct: 4 QRFVVIDVETTGNSPKKGD--KIIQIAAVVI-----------ENGQITERFSKYINPNKS 50
Query: 332 ISTGATEVTKLSNELLEHEPPFNL---EVFKIIDTFLSIFTEPACLIAYNGHSFDFPILK 502
I ++T +SN+++E+E PF EVF+++D A +A+N H FD +K
Sbjct: 51 IPAFIEQLTGISNQMVENEQPFEAVAEEVFQLLD--------GAYFVAHNIH-FDLGFVK 101
Query: 503 NQLEK 517
+L K
Sbjct: 102 YELHK 106
>UniRef50_Q3SKJ9 Cluster: DNA polymerase III, epsilon subunit; n=3;
Betaproteobacteria|Rep: DNA polymerase III, epsilon
subunit - Thiobacillus denitrificans (strain ATCC 25259)
Length = 470
Score = 38.7 bits (86), Expect = 0.19
Identities = 39/133 (29%), Positives = 62/133 (46%)
Frame = +2
Query: 152 ETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYPRKF 331
+ FVDLETT + R+TEI +V V + RV+ TL + P +
Sbjct: 8 QRLAFVDLETTGA---NAARDRVTEIGVVVV-----------DGDRVETWSTL-VNPERA 52
Query: 332 ISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQL 511
I ++T +SNE++ P F ++ D L+ + IA+N FD+ LK++
Sbjct: 53 IPQFIQQLTGISNEMVADAPTFA----RVADE-LAERLDGRLFIAHNAR-FDYGFLKHEY 106
Query: 512 EKLKVMFSRDVFC 550
++L F DV C
Sbjct: 107 QRLGRRFRADVLC 119
>UniRef50_A6DDM5 Cluster: DNA polymerase III, epsilon chain; n=1;
Caminibacter mediatlanticus TB-2|Rep: DNA polymerase
III, epsilon chain - Caminibacter mediatlanticus TB-2
Length = 274
Score = 38.3 bits (85), Expect = 0.25
Identities = 26/70 (37%), Positives = 38/70 (54%)
Frame = +2
Query: 314 LYPRKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFP 493
L P+ IS A EV K+ E LE +P F + I+D F S+ ++ +N FDF
Sbjct: 140 LNPKAKISEEAYEVHKIKQEDLEDKPTFEEKKEYILDLFNSV----DMIVGHNVF-FDFG 194
Query: 494 ILKNQLEKLK 523
+LK +LE+ K
Sbjct: 195 VLKRELERAK 204
>UniRef50_A2U0G0 Cluster: DNA Pol III Epsilon Chain; n=2;
Polaribacter|Rep: DNA Pol III Epsilon Chain -
Polaribacter dokdonensis MED152
Length = 275
Score = 38.3 bits (85), Expect = 0.25
Identities = 38/124 (30%), Positives = 56/124 (45%)
Frame = +2
Query: 161 VFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYPRKFIST 340
VF DLETT V + T RI EIS++ V P G ++ T + P I
Sbjct: 10 VFFDLETTGV---NIATDRIVEISILKV-------FPNGN----KESKTWLVNPEIEIPQ 55
Query: 341 GATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLEKL 520
GAT+V ++NE + EP F K+ + L +N + FD P+L +L +
Sbjct: 56 GATDVHGITNEKVVTEPTFKELAGKVSEMIAG-----CDLAGFNSNRFDIPLLAEELMRA 110
Query: 521 KVMF 532
+ F
Sbjct: 111 GIDF 114
>UniRef50_P47277 Cluster: DNA polymerase III polC-type; n=10;
Mycoplasma|Rep: DNA polymerase III polC-type -
Mycoplasma genitalium
Length = 1451
Score = 38.3 bits (85), Expect = 0.25
Identities = 35/124 (28%), Positives = 58/124 (46%)
Frame = +2
Query: 155 TFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYPRKFI 334
TFV D+ETT + G + E S +K N ++ Q+ L + K I
Sbjct: 415 TFVIFDIETTGL---HGRYDDVIEFSARKIKNNSEID---------HQQFFLKI--DKPI 460
Query: 335 STGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLE 514
TE+TK+++E+LE + KI + + + ++A+NG +FD P L+ Q E
Sbjct: 461 PKTITEITKITDEMLEGGIDQQQGLEKIRN-----YLDDCVMVAHNGINFDLPFLQTQFE 515
Query: 515 KLKV 526
K +
Sbjct: 516 KYNI 519
>UniRef50_Q2S3Z9 Cluster: Exonuclease, putative; n=1; Salinibacter
ruber DSM 13855|Rep: Exonuclease, putative -
Salinibacter ruber (strain DSM 13855)
Length = 249
Score = 37.5 bits (83), Expect = 0.44
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 1/127 (0%)
Frame = +2
Query: 140 MVRIET-FVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCL 316
M+ +E VF DLE T D RI +I + P G+ + + + + +
Sbjct: 1 MLHLERPLVFFDLEATGT---DPQAARIIQIGMQRF-------VPSGDGAALDETIDVLV 50
Query: 317 YPRKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPI 496
P++ I T++T LS + + PP + +I A L YN ++D P+
Sbjct: 51 DPQEEIPAAVTDLTGLSPDAVRQAPPLGAHLDRIAPLLAD-----ADLAGYNALAYDIPL 105
Query: 497 LKNQLEK 517
L+ + E+
Sbjct: 106 LQAEFER 112
>UniRef50_P74918 Cluster: DNA polymerase (EC 2.7.7.7) (Pol Tfu)
[Contains: Endonuclease PI-TfuI (EC 3.1.-.-) (Tfu pol-1
intein); Endonuclease PI-TfuII (EC 3.1.-.-) (Tfu pol-2
intein)]; n=1; Thermococcus fumicolans|Rep: DNA
polymerase (EC 2.7.7.7) (Pol Tfu) [Contains:
Endonuclease PI-TfuI (EC 3.1.-.-) (Tfu pol-1 intein);
Endonuclease PI-TfuII (EC 3.1.-.-) (Tfu pol-2 intein)] -
Thermococcus fumicolans
Length = 1523
Score = 37.5 bits (83), Expect = 0.44
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 413 KIIDTFLSIFTE--PACLIAYNGHSFDFPILKNQLEKLKVMF 532
++I FL + E P LI YNG +FDF LK + EKL V F
Sbjct: 189 EMIKRFLKVVKEKDPDVLITYNGDNFDFAYLKKRSEKLGVKF 230
>UniRef50_Q88WB1 Cluster: ATP-dependent helicase DinG; n=2;
Lactobacillus|Rep: ATP-dependent helicase DinG -
Lactobacillus plantarum
Length = 934
Score = 37.1 bits (82), Expect = 0.58
Identities = 32/122 (26%), Positives = 55/122 (45%)
Frame = +2
Query: 155 TFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYPRKFI 334
T+ VD+ETT DG+ RI +I VK N I+NT + P +
Sbjct: 6 TYAVVDIETTGTSVKDGD--RIIQIGCAFVKNNKIINT-----------FATDVNPLTTV 52
Query: 335 STGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLE 514
+T +SN + PPF+ + T S+ + +A+N +FD P + ++L+
Sbjct: 53 PAVIENLTGISNARVRKAPPFD----DLAGTVYSLL-QGTVFVAHN-VNFDLPFINSELQ 106
Query: 515 KL 520
++
Sbjct: 107 RV 108
>UniRef50_Q7NZA2 Cluster: Probable DNA-directed DNA polymerase III;
n=1; Chromobacterium violaceum|Rep: Probable
DNA-directed DNA polymerase III - Chromobacterium
violaceum
Length = 481
Score = 37.1 bits (82), Expect = 0.58
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Frame = +2
Query: 167 VDLETTDVPRNDGNTTR--ITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYPRKFIST 340
+DLETT GN R ITE+ +V + GE RV+ +L+ + P + I
Sbjct: 9 IDLETTG-----GNIARDRITEVGMVLID---------GE--RVE-RLSWLVNPGQPIPP 51
Query: 341 GATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLEKL 520
+T +SNE++ PPF+ + +++D + L+A+N FD+ LKN+ +
Sbjct: 52 FIENMTGISNEMVAGAPPFSAQADELLDRL-----QGRLLLAHNAR-FDYGFLKNEFRRH 105
Query: 521 KVMFSRDVFC 550
+ F C
Sbjct: 106 GLRFQARALC 115
>UniRef50_Q26FQ2 Cluster: DNA polymerase III, epsilon subunit; n=1;
Flavobacteria bacterium BBFL7|Rep: DNA polymerase III,
epsilon subunit - Flavobacteria bacterium BBFL7
Length = 466
Score = 36.7 bits (81), Expect = 0.77
Identities = 36/131 (27%), Positives = 63/131 (48%)
Frame = +2
Query: 158 FVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYPRKFIS 337
+ VD+ETT R GN R+TEI +V ++ G+T + K + + P I
Sbjct: 8 YCVVDIETTG-NRMTGN--RMTEICIVRMR---------GDT--ILDKYSSLIDPEVLIP 53
Query: 338 TGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLEK 517
T +T + N ++ P F +I++ FT+ +A+N + FD+ +L+N+ ++
Sbjct: 54 DYITTLTGIDNAMVASAPVFADVAEEILN-----FTKDYIFVAHNVN-FDYNVLRNEFKR 107
Query: 518 LKVMFSRDVFC 550
L F R C
Sbjct: 108 LHHDFKRKKLC 118
>UniRef50_A4C086 Cluster: DNA polymerase III subunit; n=2;
Polaribacter|Rep: DNA polymerase III subunit -
Polaribacter irgensii 23-P
Length = 361
Score = 36.7 bits (81), Expect = 0.77
Identities = 25/87 (28%), Positives = 46/87 (52%)
Frame = +2
Query: 290 VQQKLTLCLYPRKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAY 469
V Q ++L + P K I +T ++N++L P F ++I + I T+ L+A+
Sbjct: 33 VDQFISL-VNPEKEIQQFVVRLTGINNKMLRSAPKF----YEIAKRIIEI-TKDCTLVAH 86
Query: 470 NGHSFDFPILKNQLEKLKVMFSRDVFC 550
N +FD+ IL + ++L F+R+ C
Sbjct: 87 NT-TFDYRILSTEFDRLGYDFNRNTLC 112
>UniRef50_A6EU25 Cluster: DNA polymerase III, epsilon subunit; n=1;
unidentified eubacterium SCB49|Rep: DNA polymerase III,
epsilon subunit - unidentified eubacterium SCB49
Length = 472
Score = 36.3 bits (80), Expect = 1.0
Identities = 36/136 (26%), Positives = 63/136 (46%)
Frame = +2
Query: 143 VRIETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYP 322
++ E F +D+ETT R+TEI ++ V+ IV+ V L + P
Sbjct: 3 IKTEKFTVIDVETT----GGVGQGRMTEICIITVENMEIVD--------VWSSL---INP 47
Query: 323 RKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILK 502
+I T +T ++++++ P F +V II+ T A +A+N + FD+ LK
Sbjct: 48 EIYIPQHITALTGITDQMVTDAPRF-CDVAAIIEEK----TRDAIFVAHNVN-FDYGFLK 101
Query: 503 NQLEKLKVMFSRDVFC 550
+ + + FSR C
Sbjct: 102 KEFDLIGASFSRKKLC 117
>UniRef50_Q8EUK5 Cluster: DNA polymerase III subunit alpha; n=1;
Mycoplasma penetrans|Rep: DNA polymerase III subunit
alpha - Mycoplasma penetrans
Length = 1458
Score = 35.9 bits (79), Expect = 1.3
Identities = 24/77 (31%), Positives = 39/77 (50%)
Frame = +2
Query: 296 QKLTLCLYPRKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNG 475
+ + + + P + IS +TK+SNE ++ + KI D F + LIA+NG
Sbjct: 453 ESIQMFINPEEKISDKIFAITKISNEDVKDALKIKEALVKIKD-----FIGDSVLIAHNG 507
Query: 476 HSFDFPILKNQLEKLKV 526
FD P L +LE+ K+
Sbjct: 508 IKFDLPFLNCKLEENKM 524
>UniRef50_Q7NC15 Cluster: PolC; n=1; Mycoplasma gallisepticum|Rep:
PolC - Mycoplasma gallisepticum
Length = 1501
Score = 35.9 bits (79), Expect = 1.3
Identities = 32/124 (25%), Positives = 60/124 (48%)
Frame = +2
Query: 155 TFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYPRKFI 334
+FV D+ETT + + +I EI+ V VK V E ++ K + +K +
Sbjct: 416 SFVIFDIETTGL---NAYYEQIIEIAAVRVKAELNVTNHQLEFVQIG-KFEKLIKNKKPL 471
Query: 335 STGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLE 514
S T++T L + L+ + +++ F++ + L+A+NG FDF + +L+
Sbjct: 472 SKFTTQLTGLKDSDLKDAQ----DEKTVLEEFVNFIQKDDVLVAHNGIDFDFIWINTKLD 527
Query: 515 KLKV 526
K K+
Sbjct: 528 KYKL 531
>UniRef50_Q6YQB0 Cluster: DNA polymerase III alpha subunit; n=2;
Candidatus Phytoplasma asteris|Rep: DNA polymerase III
alpha subunit - Onion yellows phytoplasma
Length = 1571
Score = 35.9 bits (79), Expect = 1.3
Identities = 32/124 (25%), Positives = 63/124 (50%)
Frame = +2
Query: 155 TFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYPRKFI 334
T+V DLETT + +I EI+ V +K+ + + F + QQKLT +
Sbjct: 480 TYVVFDLETTGL---SNVRDKIIEIAGVKIKKGNKIGE-FQKFIDPQQKLTKTI------ 529
Query: 335 STGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLE 514
T++T +++E+L+ + + +++ FL+ + C++ + SFD LK + +
Sbjct: 530 ----TDITNITDEMLQGQQTID----QVLPQFLAFAKD--CVLVAHNASFDINFLKEKAK 579
Query: 515 KLKV 526
+LK+
Sbjct: 580 ELKI 583
>UniRef50_A7PQT3 Cluster: Chromosome chr6 scaffold_25, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr6 scaffold_25, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 98
Score = 35.5 bits (78), Expect = 1.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 503 NQLEKLKVMFSRDVFCADCLYGFYDIDSIKSNLNMQETDCT 625
N LEKLK++F F CL F+ +D +K NL +C+
Sbjct: 11 NNLEKLKILFYIQYFYYLCLIYFFIVDKLKINLATSPEECS 51
>UniRef50_Q8IET6 Cluster: Putative uncharacterized protein
PF13_0015; n=5; Plasmodium|Rep: Putative uncharacterized
protein PF13_0015 - Plasmodium falciparum (isolate 3D7)
Length = 800
Score = 35.5 bits (78), Expect = 1.8
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 359 KLSNELLEHEPPFNLEVFKIIDTFLSIFTEPA-CLIAYNGHSFDFPILKNQLEKLKVMFS 535
K++ + PP+ + +F+++ +T+P +I N H +D PIL L+++ S
Sbjct: 514 KITESIYNSTPPYRVIMFELMTRLFRFYTKPIDLIITMNTHRYDTPILLKHSNSLQLILS 573
>UniRef50_Q9PBI7 Cluster: DNA polymerase III, epsilon chain; n=6;
Proteobacteria|Rep: DNA polymerase III, epsilon chain -
Xylella fastidiosa
Length = 239
Score = 35.1 bits (77), Expect = 2.3
Identities = 37/126 (29%), Positives = 56/126 (44%)
Frame = +2
Query: 161 VFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYPRKFIST 340
+ +D ETT + + GN RI EI V + + F L P +
Sbjct: 8 IVLDTETTGLEWSKGN--RIVEIGAVELLDRRLSGDKFHRY----------LKPDVSFES 55
Query: 341 GATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLEKL 520
GA EVT L+ E L +P F++ I D FL+ + A LI +N +FD L +L +L
Sbjct: 56 GAQEVTGLTMEFLADKPEFSM----IADEFLA-YINGAELIIHNA-AFDLGFLDYELSRL 109
Query: 521 KVMFSR 538
+ +
Sbjct: 110 GSQYGK 115
>UniRef50_A0LZ46 Cluster: Exonuclease family protein; n=10;
Flavobacteria|Rep: Exonuclease family protein - Gramella
forsetii (strain KT0803)
Length = 457
Score = 35.1 bits (77), Expect = 2.3
Identities = 23/87 (26%), Positives = 44/87 (50%)
Frame = +2
Query: 290 VQQKLTLCLYPRKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAY 469
V Q ++L + P + I +T ++N++L++ P F +I++ TE L+A+
Sbjct: 33 VDQFISL-VNPEQPIQPFVVNLTGINNDMLKNAPKFYEVAKRIVE-----ITEDCILVAH 86
Query: 470 NGHSFDFPILKNQLEKLKVMFSRDVFC 550
N FD+ IL+ + +L + R C
Sbjct: 87 NA-KFDYRILRTEFRRLGFEYERKSLC 112
>UniRef50_O59610 Cluster: DNA polymerase (EC 2.7.7.7) [Contains: Pho
pol intein (Pho Pol I intein)]; n=11; Archaea|Rep: DNA
polymerase (EC 2.7.7.7) [Contains: Pho pol intein (Pho
Pol I intein)] - Pyrococcus horikoshii
Length = 1235
Score = 35.1 bits (77), Expect = 2.3
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 446 EPACLIAYNGHSFDFPILKNQLEKL--KVMFSRD 541
+P +I YNG +FDFP L + EKL K++ RD
Sbjct: 202 DPDVIITYNGDNFDFPYLLKRAEKLGIKLLLGRD 235
>UniRef50_A5VK04 Cluster: DnaQ family exonuclease/DinG family
helicase, putative; n=2; Lactobacillus reuteri|Rep: DnaQ
family exonuclease/DinG family helicase, putative -
Lactobacillus reuteri F275
Length = 954
Score = 34.7 bits (76), Expect = 3.1
Identities = 35/117 (29%), Positives = 54/117 (46%)
Frame = +2
Query: 167 VDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYPRKFISTGA 346
VDLETT N G+ RI +I V V+ I+N + K+ PR+ I
Sbjct: 22 VDLETTGTNVNHGD--RIIQIGCVLVQDGEIIN-------HFETKIN----PREKIPRSI 68
Query: 347 TEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLEK 517
++T + ++ + P F I T S+ E +A+N + FDFP L +LE+
Sbjct: 69 VQLTGIEDKDVRKAPLFE----DIAGTIYSLLAETT-FVAHNVN-FDFPFLNAELER 119
>UniRef50_Q55G17 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 656
Score = 34.7 bits (76), Expect = 3.1
Identities = 26/55 (47%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +2
Query: 359 KLSNELLEHEPPFNLEVFKIIDTFLSIF---TEPACL-IAYNGHSFDFPILKNQL 511
K S EL P LEV K+ DTF S T PA L Y GH+F+ ILKN L
Sbjct: 205 KYSQELKVGVLPHGLEVLKLGDTFNSTIECNTLPATLKELYFGHAFNQEILKNSL 259
>UniRef50_A5F9M6 Cluster: DNA polymerase III, epsilon subunit
related exonuclease; n=1; Clostridium kluyveri DSM
555|Rep: DNA polymerase III, epsilon subunit related
exonuclease - Clostridium kluyveri DSM 555
Length = 441
Score = 34.3 bits (75), Expect = 4.1
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 1/146 (0%)
Frame = +2
Query: 110 TFKKRL*NREMVRIETFVFVDLETTDV-PRNDGNTTRITEISLVAVKRNHIVNTPFGETP 286
T K + N+ + FV VDLETT + P D I EI+ + N I++T
Sbjct: 115 TGKNKSINKSQGVFDNFVVVDLETTGLEPTRD----YIIEIAAAKYENNEIIDT------ 164
Query: 287 RVQQKLTLCLYPRKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIA 466
T + P FI T + + N++++ P E+ +++ F++ F L+A
Sbjct: 165 -----YTTLVNPEVFIPPNITNINHIDNDMVKDCP----EIKEVLPGFMN-FIGQLPLVA 214
Query: 467 YNGHSFDFPILKNQLEKLKVMFSRDV 544
+N FD L L L + + +
Sbjct: 215 HNA-PFDIKFLNANLALLGLYLNNPI 239
>UniRef50_Q5FJX1 Cluster: ATP-dependent DNA helicase; n=5;
Lactobacillus|Rep: ATP-dependent DNA helicase -
Lactobacillus acidophilus
Length = 927
Score = 33.9 bits (74), Expect = 5.4
Identities = 30/120 (25%), Positives = 50/120 (41%)
Frame = +2
Query: 152 ETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYPRKF 331
+TF VDLETT R +G+ I + +K +V T + + P +
Sbjct: 8 DTFAVVDLETTGTQRENGH--HIIQFGCAIIKNMKVVKT-----------YSFLINPHRE 54
Query: 332 ISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQL 511
I +T +SNE ++ + F+ KI+ + +A+N FD P L +L
Sbjct: 55 IPQSVVNLTGISNEDVQKQKDFDYYAPKIVS-----ILQDTVFVAHN-VDFDLPFLNYEL 108
>UniRef50_A5ZQC7 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus obeum ATCC 29174|Rep: Putative
uncharacterized protein - Ruminococcus obeum ATCC 29174
Length = 342
Score = 33.9 bits (74), Expect = 5.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 416 IIDTFLSIFTEPACLIAYNGHSFDFPILKNQLEKLKV 526
++ F S T C I YNG+ FD P L+ + K K+
Sbjct: 81 VLQEFASFLTNADCTIQYNGNRFDQPFLEERYRKHKM 117
>UniRef50_A3JBF5 Cluster: Putative uncharacterized protein; n=2;
Marinobacter|Rep: Putative uncharacterized protein -
Marinobacter sp. ELB17
Length = 483
Score = 33.9 bits (74), Expect = 5.4
Identities = 40/136 (29%), Positives = 61/136 (44%)
Frame = +2
Query: 143 VRIETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIVNTPFGETPRVQQKLTLCLYP 322
++ TF F+DLETT T RITEI + + GE V Q TL + P
Sbjct: 8 LKTTTFAFLDLETTG---GSVATDRITEIGIQFWRA--------GEC--VGQWQTL-VNP 53
Query: 323 RKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILK 502
+ IS ++T +SN ++ P +F+ I L + +A+N FD+ +K
Sbjct: 54 KTRISPFIEQLTGISNAMVADAP-----LFEDIADELEQRLDGVVFVAHNAR-FDYGFVK 107
Query: 503 NQLEKLKVMFSRDVFC 550
+ +L MF V C
Sbjct: 108 GEFRRLGRMFVAKVLC 123
>UniRef50_A5DU53 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 867
Score = 33.5 bits (73), Expect = 7.2
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Frame = +2
Query: 341 GATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHS---FDFPILKNQL 511
G EV L N+L E + P N+E +IDT LS+ IA N + + + L
Sbjct: 493 GLMEVQPLINQL-EKDEPLNIEKISLIDTLLSLMHVLLFEIADNSNKKWLLYLRLCRKLL 551
Query: 512 EKLKVMFSRDVFCADCLYGFYDIDSIKSNLNMQETDCTD-EIDFYKPSTSMQNINEST 682
+ ++ S+D L + ++ + + N+ T C D + F + +++ +ES+
Sbjct: 552 SQFRITMSKDSTAYYLLK--FSLEFLHYHENVGRTACKDPSLSFLLVTDKLEHDDESS 607
>UniRef50_Q3IPS5 Cluster: Putative uncharacterized protein; n=1;
Natronomonas pharaonis DSM 2160|Rep: Putative
uncharacterized protein - Natronomonas pharaonis (strain
DSM 2160 / ATCC 35678)
Length = 514
Score = 33.5 bits (73), Expect = 7.2
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = +2
Query: 419 IDTFLSIFTEPAC---LIAYNGHSFDFPILKNQLEK 517
I++F+S PA ++A+NG FDFPI+ QLE+
Sbjct: 352 IESFISWLAGPAQGRPVVAWNGRRFDFPIIARQLEQ 387
>UniRef50_Q6QXG1 Cluster: DNA polymerase; n=10; Granulovirus|Rep:
DNA polymerase - Agrotis segetum granulosis virus (AsGV)
(Agrotis segetumgranulovirus)
Length = 1145
Score = 33.1 bits (72), Expect = 9.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 392 PFNLEVFKIIDTFLSIF--TEPACLIAYNGHSFDFPILKNQLEKLKV 526
PFN E ++ TFL + T P ++ YNG FD P + +++KL +
Sbjct: 308 PFNNERDMLV-TFLEVLWRTNPDEILDYNGDKFDIPYIIGRMKKLNI 353
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,063,036
Number of Sequences: 1657284
Number of extensions: 13384783
Number of successful extensions: 30930
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 29771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30898
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77882636090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -