Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP24_F_N01
(872 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 32 0.093
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac... 29 0.65
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 29 0.86
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 27 2.6
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.6
SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit... 26 6.1
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 6.1
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 26 8.1
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 8.1
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr... 26 8.1
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 26 8.1
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 32.3 bits (70), Expect = 0.093
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = -2
Query: 328 FTRVQAQGEFLLNSRRLAERSINNMIPFHCH*TYFGYSRRITVISR---DIGGFQVNKNE 158
F +V+ + L +S L +RS++ + PF TYFG+ I I + + VN+NE
Sbjct: 200 FGKVEGEISALYDSVLLVDRSLDRITPFLTQLTYFGFLDEILGIQQMNVKLPSSLVNRNE 259
Query: 157 SFDT 146
+ +T
Sbjct: 260 ASNT 263
>SPAC4G9.13c |vps26|pep8|retromer complex subunit
Vps26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 29.5 bits (63), Expect = 0.65
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +3
Query: 99 LQFKHLKNVYRTEKWCVSKLSFLLTWKPPMSLEMTVIRRE 218
++F++ KN Y + + K+ F+L +E+++IRRE
Sbjct: 172 IEFEYSKNKYHLKDVIIGKIYFILVRIKVQRMEVSIIRRE 211
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 29.1 bits (62), Expect = 0.86
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +2
Query: 362 LSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLEKLKVMFSRD 541
LS+ +EP + F++ID F SI+ + +YNG D +L N + +MF D
Sbjct: 503 LSHLSKRYEPEVGNDAFEVIDDFNSIY-----IYSYNGER-DELVLNNLRPRYVIMFDSD 556
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 350 EVTKLSNELLEHEPPFNLEVFKIIDTF 430
E +L NE L+H+P + E+ + DTF
Sbjct: 189 EYEELRNECLKHDPQLDAEIRTLQDTF 215
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 584 SIKSNLNMQETDCTDEIDFYKPSTSMQNINESTPKRQKLY*IKYN*KRK 730
S S+ + Q + + + F PS +++++ +P+R+ + K N KRK
Sbjct: 134 SSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRK 182
>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 131
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 575 DIDSIKSNLNMQETDCTDEIDFYKPSTSMQN 667
D+D +SNLN+Q+ +EI +K + N
Sbjct: 49 DLDRFRSNLNVQQEQLQNEILGFKQDVKLLN 79
>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
Arc21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Frame = +3
Query: 57 AEVLISFLTYYTFLLQFKHLKNVYRTE-----KW--CVSKLSFL 167
AE++ ++LT + L ++ L +VY TE KW C SK F+
Sbjct: 127 AEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFM 170
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 410 FKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLEKL 520
+ I++ F + F PAC+ N SF F + L KL
Sbjct: 128 YDILEQFNAPFVVPACVGTRNTISFSFHVTPPALSKL 164
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 25.8 bits (54), Expect = 8.1
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2
Query: 350 EVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFDFPILKNQLEKLKVM 529
E KL NE ++ E EV K L++F+E L Y S F I K KLK +
Sbjct: 514 EAEKLYNEQVDREKSQFKEVEKQNQP-LAVFSESNTLGDYKVDSSVFEISKQNRSKLKTL 572
Query: 530 FS 535
+
Sbjct: 573 LA 574
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 521 KVMFSRDVFCADCLYGFYDIDS 586
+V+FS FC + LY +Y D+
Sbjct: 80 RVLFSSPSFCGNTLYTYYGFDN 101
>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 152 ETFVFVDLETTDVPRNDGNTTRITEISLVAVKRNHIV 262
E FV ++ VPR+D N + E S+ +K HI+
Sbjct: 96 EVFVHRNIANV-VPRSDINALAVMEYSVTVLKVKHII 131
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 8.1
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Frame = +2
Query: 194 RNDGNTTRITEISLVAVKRNHIVNTPFGETP----RVQQKLTLCLYPRKFISTGATEVTK 361
RN R E+ L+ K+N + + P ++QQK + K +S+ TE+
Sbjct: 278 RNKIRQRREEELRLLEQKKNEELLRTIDKAPAISKKLQQKDKAEKFSNKAVSSSTTEIKL 337
Query: 362 LSNELLEHEPPFNLEVFKIIDTFLSIFTE 448
+ +H P N K+ D S E
Sbjct: 338 KKKKFGKHRLPNNPLEIKLGDELTSSLRE 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,922
Number of Sequences: 5004
Number of extensions: 63086
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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