Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_N01
         (872 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070563-1|AAL48034.1|  351|Drosophila melanogaster LD40940p pro...    97   3e-20
AE014134-526|AAF51172.1|  351|Drosophila melanogaster CG3165-PA ...    97   3e-20
X88928-1|CAA61369.1| 1092|Drosophila melanogaster DNA polymerase...    29   6.3  
AY113526-1|AAM29531.1| 1092|Drosophila melanogaster RE60511p pro...    29   6.3  
AE014296-2611|AAF49555.1| 1092|Drosophila melanogaster CG5949-PA...    29   6.3  

>AY070563-1|AAL48034.1|  351|Drosophila melanogaster LD40940p
           protein.
          Length = 351

 Score = 97.1 bits (231), Expect = 3e-20
 Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 10/168 (5%)
 Frame = +2

Query: 137 EMVRIETFVFVDLETTDVPRNDGNTTRITEISLVAVK----------RNHIVNTPFGETP 286
           E  +I TF  +DLETT++P    N   ITE+ + A +          ++          P
Sbjct: 13  EQPKISTFAVLDLETTNLPAYRNNRVSITELCIYAFEAALLKKKKKEQDQDEQQELPAAP 72

Query: 287 RVQQKLTLCLYPRKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIA 466
           RV  KL +   P   +   A  +T LSN LLE E   + +  ++I +FL     P CL+A
Sbjct: 73  RVLHKLNVLFQPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVA 132

Query: 467 YNGHSFDFPILKNQLEKLKVMFSRDVFCADCLYGFYDIDSIKSNLNMQ 610
           +NG  FDFPIL+   EKL +   + + C D L  F +ID  +     Q
Sbjct: 133 HNGWGFDFPILRQAFEKLNIELPQSLTCVDSLRAFMEIDDTQQKETSQ 180


>AE014134-526|AAF51172.1|  351|Drosophila melanogaster CG3165-PA
           protein.
          Length = 351

 Score = 97.1 bits (231), Expect = 3e-20
 Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 10/168 (5%)
 Frame = +2

Query: 137 EMVRIETFVFVDLETTDVPRNDGNTTRITEISLVAVK----------RNHIVNTPFGETP 286
           E  +I TF  +DLETT++P    N   ITE+ + A +          ++          P
Sbjct: 13  EQPKISTFAVLDLETTNLPAYRNNRVSITELCIYAFEAALLKKKKKEQDQDEQQELPAAP 72

Query: 287 RVQQKLTLCLYPRKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIA 466
           RV  KL +   P   +   A  +T LSN LLE E   + +  ++I +FL     P CL+A
Sbjct: 73  RVLHKLNVLFQPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVA 132

Query: 467 YNGHSFDFPILKNQLEKLKVMFSRDVFCADCLYGFYDIDSIKSNLNMQ 610
           +NG  FDFPIL+   EKL +   + + C D L  F +ID  +     Q
Sbjct: 133 HNGWGFDFPILRQAFEKLNIELPQSLTCVDSLRAFMEIDDTQQKETSQ 180


>X88928-1|CAA61369.1| 1092|Drosophila melanogaster DNA polymerase
           delta protein.
          Length = 1092

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 446 EPACLIAYNGHSFDFPILKNQLEKLKV 526
           +P  L  YN ++FDFP L N+   LKV
Sbjct: 373 DPDILTGYNINNFDFPYLLNRAAHLKV 399


>AY113526-1|AAM29531.1| 1092|Drosophila melanogaster RE60511p
           protein.
          Length = 1092

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 446 EPACLIAYNGHSFDFPILKNQLEKLKV 526
           +P  L  YN ++FDFP L N+   LKV
Sbjct: 373 DPDILTGYNINNFDFPYLLNRAAHLKV 399


>AE014296-2611|AAF49555.1| 1092|Drosophila melanogaster CG5949-PA
           protein.
          Length = 1092

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 446 EPACLIAYNGHSFDFPILKNQLEKLKV 526
           +P  L  YN ++FDFP L N+   LKV
Sbjct: 373 DPDILTGYNINNFDFPYLLNRAAHLKV 399


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,403,893
Number of Sequences: 53049
Number of extensions: 615628
Number of successful extensions: 1411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4229643912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)