Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_N01
         (872 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068720-9|AAM15584.1|  209|Caenorhabditis elegans Hypothetical ...    32   0.62 
Z81124-4|CAB03372.1|  341|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z70205-8|CAO78730.1|  270|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.    28   7.6  

>AF068720-9|AAM15584.1|  209|Caenorhabditis elegans Hypothetical
           protein K02H11.9 protein.
          Length = 209

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +2

Query: 494 ILKNQLEKLKV---MFSRDVFCADCLYGFYDIDSIKSNLNMQETDCTDEIDFYKPSTSMQ 664
           ILK QLEKLK+    + +  F  + +Y   +I+ +K  LN          D+Y+     +
Sbjct: 96  ILKKQLEKLKLDNESYEKSFFIVNDMYATAEIEQMKKKLNKMNVKHRALCDYYRCRLDCK 155

Query: 665 NINESTPK 688
            I  +  K
Sbjct: 156 TIYSNEEK 163


>Z81124-4|CAB03372.1|  341|Caenorhabditis elegans Hypothetical
           protein T21B4.6 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 440 FTEPACLIAYNGHSFDFPILKNQLEKLKVMFSRDVFCADCLYG-FYDIDSIKS 595
           FTEP  ++A  G   D+ +  + L  L ++F   +F   C+Y  F D  S  S
Sbjct: 193 FTEPFFVLAAPGFWEDYMVTISSLLNLAIIFQISLFSTCCIYYLFIDRSSFTS 245


>Z70205-8|CAO78730.1|  270|Caenorhabditis elegans Hypothetical
           protein C11H1.4b protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 512 EKLKVMFSRDVFCADCLYGFYDIDSIKSNLNMQETDCTDEI 634
           E ++++F +   CA C+  F ++DS+        T  TD +
Sbjct: 82  ENVRLVFEKARSCAPCILFFDELDSLAPKRGHDSTGVTDRV 122


>Z70205-7|CAA94120.2|  996|Caenorhabditis elegans Hypothetical
           protein C11H1.4a protein.
          Length = 996

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 512 EKLKVMFSRDVFCADCLYGFYDIDSIKSNLNMQETDCTDEI 634
           E ++++F +   CA C+  F ++DS+        T  TD +
Sbjct: 808 ENVRLVFEKARSCAPCILFFDELDSLAPKRGHDSTGVTDRV 848


>AB054992-1|BAB62002.1|  996|Caenorhabditis elegans peroxin protein.
          Length = 996

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 512 EKLKVMFSRDVFCADCLYGFYDIDSIKSNLNMQETDCTDEI 634
           E ++++F +   CA C+  F ++DS+        T  TD +
Sbjct: 808 ENVRLVFEKARSCAPCILFFDELDSLAPKRGHDSTGVTDRV 848


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,232,360
Number of Sequences: 27780
Number of extensions: 344442
Number of successful extensions: 846
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)