Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP24_F_N01
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.9  

>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 329 FISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPACLIAYNGHSFD 487
           F  T AT+ T     L+E +PP   +    ID     F E  C++ +   ++D
Sbjct: 125 FEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYD 177


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 360 FVTSVAPVLINLRGYKHRVSFC*TRGVSPN 271
           F T++ P+L N+   K+R +F  T   SP+
Sbjct: 307 FSTTINPILYNVMSAKYRNAFKETCRCSPS 336


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 360 FVTSVAPVLINLRGYKHRVSF 298
           F T++ P+L NL   K+R +F
Sbjct: 319 FSTTINPILYNLMSIKYRNAF 339


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 521  KVMFSRDVFCADCLYGFYDIDSIKSNLNMQETDCTD 628
            KV+ + DV+C    YG     + +  LN+ ET C+D
Sbjct: 946  KVVDASDVWC---YYGGDARPAYRRRLNVNETVCSD 978


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 317 YPRKFISTGATEVTKLSNELLEHEPPFNLEVFKIIDTFLSIFTEPAC 457
           Y  K I+   T   K  NE+   EP   ++   +    LS+FT PAC
Sbjct: 5   YQMKQITNSTTMSVK--NEISTVEPVDPVKSL-VCSPDLSVFTSPAC 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,143
Number of Sequences: 438
Number of extensions: 4050
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)